The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.
| Version: | 1.2.0 |
| Depends: | R (≥ 2.6.0), kernlab (≥ 0.9), KEGG.db (≥ 2.2.0), biomaRt (≥ 1.12.1), KEGGSOAP (≥ 1.12.0), RBGL, AnnotationDbi, org.Dm.eg.db |
| Imports: | SSOAP, RCurl |
| Published: | 2009-05-10 |
| Author: | Holger Froehlich, contributions by Tim Beissbarth |
| Maintainer: | Holger Froehlich <h.froehlich at dkfz.de> |
| License: | GPL (≥ 2) |
| CRAN checks: | gene2pathway results |
| Package source: | gene2pathway_1.2.0.tar.gz |
| MacOS X binary: | not available, see check log. |
| Windows binary: | gene2pathway_1.2.0.zip |
| Reference manual: | gene2pathway.pdf |
| Vignettes: |
gene2pathway |
| Old sources: | gene2pathway archive |