geneListPie: Profiling a gene list into GOslim or KEGG function pie

"geneListPie" package is for mapping a gene list to function categories defined in GOSlim or Kegg. The results can be plotted as a pie chart to provide a quick view of the genes distribution of the gene list among the function categories. The gene list must contain a list of gene symbols. The package contains a set of pre-processed gene sets obtained from Gene Ontology and MSigDB including human, mouse, rat and yeast. To provide a high level concise view, only GO slim and kegg are provided. The gene sets are regulared updated. User can also use customized gene sets. User can use the R Pie() or Pie3D() function for plotting the pie chart. Users can also choose to output the gene function mapping results and use external software such as Excel(R) for ploting.

Version: 1.0
Depends: R (≥ 2.10)
Suggests: plotrix
Published: 2012-07-23
Author: Xutao Deng
Maintainer: Xutao Deng <xutaodeng at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: geneListPie results

Downloads:

Reference manual: geneListPie.pdf
Package source: geneListPie_1.0.tar.gz
OS X binary: geneListPie_1.0.tgz
Windows binary: geneListPie_1.0.zip