genetics: Population Genetics

Classes and methods for handling genetic data. Includes classes to represent genotypes and haplotypes at single markers up to multiple markers on multiple chromosomes. Function include allele frequencies, flagging homo/heterozygotes, flagging carriers of certain alleles, estimating and testing for Hardy-Weinberg disequilibrium, estimating and testing for linkage disequilibrium, ...

Version: 1.3.8
Depends: combinat, gdata, gtools, MASS, mvtnorm
Published: 2012-12-15
Author: Gregory Warnes, with contributions from Gregor Gorjanc, Friedrich Leisch, and Michael Man.
Maintainer: Gregory Warnes <greg at warnes.net>
License: GPL
NeedsCompilation: no
In views: Genetics
CRAN checks: genetics results

Downloads:

Package source: genetics_1.3.8.tar.gz
MacOS X binary: genetics_1.3.8.tgz
Windows binary: genetics_1.3.8.zip
Reference manual: genetics.pdf
News/ChangeLog:NEWS ChangeLog
Old sources: genetics archive

Reverse dependencies:

Reverse depends: boostSeq, forensic, introgress, luca, MasterBayes, PopGenReport, snp.plotter
Reverse imports: LDheatmap
Reverse suggests: adegenet, GenABEL, postgwas