genomic.autocorr: Models Dealing with Spatial Dependency in Genomic Data

Local structure in genomic data often induces dependence between observations taken at different genomic locations. Ignoring this dependence leads to underestimation of the standard error of parameter estimates. This package uses block bootstrapping to estimate asymptotically correct standard errors of parameters from any standard generalised linear model that may be fit by the glm() function.

Version: 1.0-1
Depends: R (≥ 3.2.2)
Imports: data.table, magrittr, reshape, parallel
Suggests: testthat
Published: 2017-10-20
Author: Chris Wallace [aut, cre], Oliver Burren [aut]
Maintainer: Chris Wallace <cew54 at cam.ac.uk>
License: GPL-2
URL: https://github.com/chr1swallace/genomic.autocorr
NeedsCompilation: no
Materials: README
CRAN checks: genomic.autocorr results

Downloads:

Reference manual: genomic.autocorr.pdf
Package source: genomic.autocorr_1.0-1.tar.gz
Windows binaries: r-devel: genomic.autocorr_1.0-1.zip, r-release: genomic.autocorr_1.0-1.zip, r-oldrel: genomic.autocorr_1.0-1.zip
OS X El Capitan binaries: r-release: genomic.autocorr_1.0-1.tgz
OS X Mavericks binaries: r-oldrel: genomic.autocorr_1.0-1.tgz

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