gkmSVM: Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.

Version: 0.80.0
Imports: kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats
LinkingTo: Rcpp
Suggests: rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors
Published: 2020-02-25
Author: Mahmoud Ghandi
Maintainer: Mike Beer <mbeer at jhu.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: C++11
CRAN checks: gkmSVM results

Downloads:

Reference manual: gkmSVM.pdf
Package source: gkmSVM_0.80.0.tar.gz
Windows binaries: r-devel: gkmSVM_0.80.0.zip, r-devel-gcc8: gkmSVM_0.80.0.zip, r-release: gkmSVM_0.80.0.zip, r-oldrel: gkmSVM_0.80.0.zip
OS X binaries: r-release: gkmSVM_0.80.0.tgz, r-oldrel: gkmSVM_0.80.0.tgz
Old sources: gkmSVM archive

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