gquad: Prediction of G Quadruplexes and Other Non-B DNA Motifs

Genomic biology is not limited to the confines of the canonical B- forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.

Version: 2.1-1
Depends: R (≥ 3.3.2)
Imports: ape (≥ 4.0), seqinr (≥ 3.3-3)
Published: 2017-06-06
Author: Hannah O. Ajoge
Maintainer: Hannah O. Ajoge <ohuajo at gmail.com>
License: Artistic-2.0
NeedsCompilation: no
CRAN checks: gquad results

Downloads:

Reference manual: gquad.pdf
Package source: gquad_2.1-1.tar.gz
Windows binaries: r-devel: gquad_2.1-1.zip, r-release: gquad_2.1-1.zip, r-oldrel: gquad_2.1-1.zip
OS X El Capitan binaries: r-release: gquad_2.1-1.tgz
OS X Mavericks binaries: r-oldrel: gquad_2.1-1.tgz
Old sources: gquad archive

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