hapassoc: Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Version: 1.2-6
Depends: R (≥ 2.6.0), stats
Published: 2012-09-22
Author: K. Burkett, B. McNeney, J. Graham, with code for case-control data contributed by Zhijian Chen
Maintainer: K. Burkett <kburkett at sfu.ca>
License: GPL-2
URL: http://stat.sfu.ca/statgen/research/hapassoc.html
NeedsCompilation: yes
Citation: hapassoc citation info
Materials: ChangeLog
In views: Genetics
CRAN checks: hapassoc results

Downloads:

Reference manual: hapassoc.pdf
Vignettes: hapassoc
Package source: hapassoc_1.2-6.tar.gz
MacOS X binary: hapassoc_1.2-6.tgz
Windows binary: hapassoc_1.2-6.zip
Old sources: hapassoc archive