hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm

The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Version: 1.2-9
Depends: R (≥ 2.6.0), stats
Published: 2022-05-25
DOI: 10.32614/CRAN.package.hapassoc
Author: K. Burkett, B. McNeney, J. Graham, with code for case-control data contributed by Zhijian Chen
Maintainer: K. Burkett <kburkett at uottawa.ca>
License: GPL-2
URL: https://sfustatgen.github.io/research/hapassoc.html
NeedsCompilation: yes
Citation: hapassoc citation info
Materials: ChangeLog
In views: MissingData
CRAN checks: hapassoc results


Reference manual: hapassoc.pdf
Vignettes: hapassoc


Package source: hapassoc_1.2-9.tar.gz
Windows binaries: r-devel: hapassoc_1.2-9.zip, r-release: hapassoc_1.2-9.zip, r-oldrel: hapassoc_1.2-9.zip
macOS binaries: r-release (arm64): hapassoc_1.2-9.tgz, r-oldrel (arm64): hapassoc_1.2-9.tgz, r-release (x86_64): hapassoc_1.2-9.tgz, r-oldrel (x86_64): hapassoc_1.2-9.tgz
Old sources: hapassoc archive


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