hbm: Hierarchical Block Matrix Analysis

A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.

Version: 1.0
Depends: R (≥ 3.0.2)
Imports: Matrix, foreach, doParallel
Published: 2015-02-01
Author: Yoli Shavit
Maintainer: Yoli Shavit <ys388 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: hbm results

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Reference manual: hbm.pdf
Package source: hbm_1.0.tar.gz
Windows binaries: r-devel: hbm_1.0.zip, r-release: hbm_1.0.zip, r-oldrel: hbm_1.0.zip
OS X El Capitan binaries: r-release: hbm_1.0.tgz
OS X Mavericks binaries: r-oldrel: hbm_1.0.tgz

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