hierfstat: Estimation and Tests of Hierarchical F-Statistics

Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution(1998), 52:950). Tests via randomisations the significance of each F and variance components, using the likelihood-ratio statistics G (Goudet et al. (1996) <https://academic.oup.com/genetics/article/144/4/1933/6017091>). Estimates genetic diversity statistics for haploid and diploid genetic datasets in various formats, including inbreeding and coancestry coefficients, and population specific F-statistics following Weir and Goudet (2017) <https://academic.oup.com/genetics/article/206/4/2085/6072590>.

Version: 0.5-11
Depends: R (≥ 2.10)
Imports: ade4, adegenet, gaston, gtools, methods
Suggests: ape, pegas, knitr, rmarkdown, testthat
Published: 2022-05-05
DOI: 10.32614/CRAN.package.hierfstat
Author: Jerome Goudet [aut, cre], Thibaut Jombart [aut], Zhian N. Kamvar [ctb], Eric Archer [ctb], Olivier Hardy [ctb]
Maintainer: Jerome Goudet <jerome.goudet at unil.ch>
BugReports: https://github.com/jgx65/hierfstat/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://www.r-project.org, https://github.com/jgx65/hierfstat
NeedsCompilation: no
CRAN checks: hierfstat results


Reference manual: hierfstat.pdf
Vignettes: Hierfstat latest features
Importing data in Hierfstat


Package source: hierfstat_0.5-11.tar.gz
Windows binaries: r-devel: hierfstat_0.5-11.zip, r-release: hierfstat_0.5-11.zip, r-oldrel: hierfstat_0.5-11.zip
macOS binaries: r-release (arm64): hierfstat_0.5-11.tgz, r-oldrel (arm64): hierfstat_0.5-11.tgz, r-release (x86_64): hierfstat_0.5-11.tgz, r-oldrel (x86_64): hierfstat_0.5-11.tgz
Old sources: hierfstat archive

Reverse dependencies:

Reverse imports: dartR.sim, GenomeAdmixR, graph4lg, PopGenHelpR, wingen
Reverse suggests: adegenet, dartR, dartR.base


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