hoardeR: Collect and Retrieve Annotation Data for Various Genomic Data Using Different Web Services

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

Version: 0.9
Depends: R (≥ 3.2)
Imports: httr (≥ 0.2), XML (≥ 3.98-1.1), stringr (≥ 0.6.2), MASS (≥ 7.3-31), R.utils (≥ 1.32.4), data.table, seqinr, Biostrings, GenomicRanges, bamsignals, IRanges
Suggests: knitr, rmarkdown
Published: 2016-09-01
Author: Daniel Fischer [aut, cre], Anu Sironen [aut]
Maintainer: Daniel Fischer <daniel.fischer at luke.fi>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: ChangeLog
CRAN checks: hoardeR results

Downloads:

Reference manual: hoardeR.pdf
Vignettes: An Introduction to hoardeR
Package source: hoardeR_0.9.tar.gz
Windows binaries: r-devel: hoardeR_0.9.zip, r-release: hoardeR_0.9.zip, r-oldrel: hoardeR_0.9.zip
OS X Mavericks binaries: r-release: hoardeR_0.1.tgz, r-oldrel: hoardeR_0.1.tgz
Old sources: hoardeR archive

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