hwde: Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci

Fits models for genotypic disequilibria, as described in Huttley and Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms are available that account for first order interactions between loci. Also implements, for a single locus in a single population, a conditional exact test for Hardy-Weinberg equilibrium

Version: 0.64
Depends: R (≥ 2.0)
Published: 2013-11-28
Author: John Maindonald, with \code{hwexact()} from Randall Johnson.
Maintainer: John Maindonald <John.Maindonald at anu.edu.au>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: (c) Centre for Bioinformation Science, John Curtin Research School of Medical Sciences and Centre for Mathematics and Its Applications, The Australian National University
URL: http://www.maths.anu.edu.au/~johnm
NeedsCompilation: no
Materials: NEWS
In views: Genetics
CRAN checks: hwde results

Downloads:

Reference manual: hwde.pdf
Vignettes: hwde: An R Package for Tests and Models for Genotypic Disequilibria
Package source: hwde_0.64.tar.gz
MacOS X binary: hwde_0.64.tgz
Windows binary: hwde_0.64.zip
Old sources: hwde archive