ibdsim2: Simulation of Chromosomal Regions Shared by Family Members

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes are simulated for all pedigree members. Additional features include calculation of realised IBD coefficients and plots of IBD segment distributions.

Version: 1.2
Depends: R (≥ 3.5.0), pedtools (≥ 0.9.4)
Imports: Rcpp, ggplot2, glue, ribd (≥ 1.1.0)
LinkingTo: Rcpp
Suggests: testthat
Published: 2020-07-11
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-3
URL: https://github.com/magnusdv/ibdsim2
NeedsCompilation: yes
Language: en-GB
Materials: README NEWS
CRAN checks: ibdsim2 results

Downloads:

Reference manual: ibdsim2.pdf
Package source: ibdsim2_1.2.tar.gz
Windows binaries: r-devel: ibdsim2_1.2.zip, r-release: ibdsim2_1.1.zip, r-oldrel: ibdsim2_1.2.zip
macOS binaries: r-release: ibdsim2_1.1.tgz, r-oldrel: ibdsim2_1.2.tgz
Old sources: ibdsim2 archive

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