idiogramFISH: Idiograms with Marks and Karyotype Indices

Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Two styles of centromeres are available: triangular and rounded; and seven styles of marks: square, dots, cM, cMLeft, cenStyle, upArrow, downArrow; its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Version: 1.15.3
Depends: R (≥ 3.0)
Imports: crayon, dplyr, tidyr
Suggests: plyr, ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra, prettydoc, rvcheck, badger, rmarkdown, RCurl, rentrez
Published: 2020-07-02
Author: Fernando Roa [aut, cre], Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao at unal.edu.co>
BugReports: https://gitlab.com/ferroao/idiogramFISH/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://ferroao.gitlab.io/manualidiogramfish/, https://ferroao.gitlab.io/idiogramFISH
NeedsCompilation: no
SystemRequirements: pandoc (>= 2.0)
Citation: idiogramFISH citation info
Materials: README NEWS
CRAN checks: idiogramFISH results

Downloads:

Reference manual: idiogramFISH.pdf
Vignettes: 1. Plotting chromosomes
2. Circular Plots
3. Plotting alongside phylogeny
4. Human karyotype
idiogramFISH: Installation and minimal examples
Package source: idiogramFISH_1.15.3.tar.gz
Windows binaries: r-devel: idiogramFISH_1.15.1.zip, r-release: idiogramFISH_1.15.1.zip, r-oldrel: idiogramFISH_1.15.1.zip
macOS binaries: r-release: idiogramFISH_1.15.1.tgz, r-oldrel: idiogramFISH_1.15.3.tgz
Old sources: idiogramFISH archive

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