idopNetwork: A Cartographic Tool to Chart Spatial Microbial Interaction Networks

Most existing approaches for network reconstruction can only infer an overall network and, also, fail to capture a complete set of network properties. To address these issues, a new model has been developed, which converts static data into their 'dynamic' form. 'idopNetwork' is an 'R' interface to this model, it can inferring informative, dynamic, omnidirectional and personalized networks. For more information on functional clustering part, see Kim et al. (2008) <doi:10.1534/genetics.108.093690>, Wang et al. (2011) <doi:10.1093/bib/bbr032>. For more information on our model, see Chen et al. (2019) <doi:10.1038/s41540-019-0116-1>, and Cao et al. (2022) <doi:10.1080/19490976.2022.2106103>.

Version: 0.1.1
Depends: R (≥ 3.50)
Imports: grDevices, stats, mvtnorm, orthopolynom, parallel, deSolve, ggplot2, reshape2, glmnet, igraph, scales, patchwork
Suggests: knitr, rmarkdown
Published: 2022-11-21
Author: Ang Dong
Maintainer: Ang Dong <fantasys05227 at>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: idopNetwork results


Reference manual: idopNetwork.pdf
Vignettes: idopNetwork_vignette


Package source: idopNetwork_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): idopNetwork_0.1.1.tgz, r-oldrel (arm64): idopNetwork_0.1.1.tgz, r-release (x86_64): idopNetwork_0.1.1.tgz, r-oldrel (x86_64): idopNetwork_0.1.1.tgz
Old sources: idopNetwork archive


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