ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls.

Version: 1.0
Imports: stats, multtest
Published: 2015-08-26
Author: Jan Budczies
Maintainer: Jan Budczies <jan.budczies at>
License: GPL-3
NeedsCompilation: no
CRAN checks: ioncopy results


Reference manual: ioncopy.pdf
Package source: ioncopy_1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: ioncopy_1.0.tgz
OS X Mavericks binaries: r-oldrel: ioncopy_1.0.tgz


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