isocat: Isotope Origin Clustering and Assignment Tools

This resource provides tools to create, compare, and post-process spatial isotope assignment models of animal origin. It generates probability-of-origin maps for individuals based on user-provided tissue and environment isotope values (e.g., as generated by IsoMAP, Bowen et al. [2013] <doi:10.1111/2041-210X.12147>) using the framework established in Bowen et al. (2010) <doi:10.1146/annurev-earth-040809-152429>). The package 'isocat' can then quantitatively compare and cluster these maps to group individuals by similar origin. It also includes techniques for applying four approaches (cumulative sum, odds ratio, quantile only, and quantile simulation) with which users can summarize geographic origins and probable distance traveled by individuals. Campbell et al. [2020] establishes several of the functions included in this package <doi:10.1515/ami-2020-0004>.

Version: 0.2.6
Depends: R (≥ 2.10), utils, raster
Imports: stats, plyr, sp, magrittr, foreach
Suggests: dendextend, doParallel, dplyr, ggplot2, gridExtra, kableExtra, knitr, parallel, pvclust, rmarkdown, rasterVis, viridisLite
Published: 2020-07-03
Author: Caitlin Campbell ORCID iD [aut, cre]
Maintainer: Caitlin Campbell <caitjcampbell at gmail.com>
License: CC0
NeedsCompilation: no
Language: en-US
Citation: isocat citation info
Materials: README NEWS
CRAN checks: isocat results

Downloads:

Reference manual: isocat.pdf
Vignettes: Isotope Clustering and Assignment Tools
Package source: isocat_0.2.6.tar.gz
Windows binaries: r-devel: isocat_0.2.5.zip, r-release: isocat_0.2.5.zip, r-oldrel: isocat_0.2.5.zip
macOS binaries: r-release: isocat_0.2.5.tgz, r-oldrel: isocat_0.2.5.tgz
Old sources: isocat archive

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