Jaatha is a composite likelihood method for inferring evolutionary parameters using genetic data. Given a model of the evolutionary history of two biological populations as well as SNP data from multiple individuals from each population, it estimates model parameters like the time of separation of both species.
| Version: | 2.0.2 |
| Depends: | R (≥ 2.14.2), methods, foreach (≥ 1.2.0-1), phyclust (≥ 0.1-14), ape (≥ 2.7), Rcpp (≥ 0.9.9) |
| LinkingTo: | Rcpp |
| Suggests: | doMC (≥ 1.1.1) |
| Published: | 2013-01-21 |
| Author: | Lisha Mathew, Paul R. Staab and Dirk Metzler |
| Maintainer: | Paul R. Staab <staab at biologie.uni-muenchen.de> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| CRAN checks: | jaatha results |
| Package source: | jaatha_2.0.2.tar.gz |
| MacOS X binary: | jaatha_2.0.2.tgz |
| Windows binary: | jaatha_2.0.2.zip |
| Reference manual: | jaatha.pdf |
| Vignettes: |
The Jaatha HowTo |
| News/ChangeLog: | NEWS |
| Old sources: | jaatha archive |