Given a set of phylogenetic trees on a group of taxa (for example trees based on individual gene sequences), we present a method for identifying a subset of trees which are discordant with the other trees in the set. These discordant trees may arise from either biologically interesting phenomena (horizontal gene transfers, for example) or more mundane sequencing or annotation errors.
| Version: | 0.1.2 |
| Depends: | R (≥ 2.15.1) |
| Imports: | ape, phangorn, ggplot2 |
| Suggests: | optparse |
| Published: | 2013-02-09 |
| Author: | Grady Weyenberg and Peter Huggins |
| Maintainer: | Ruriko Yoshida <ruriko.yoshida at uky.edu> |
| License: | GPL-2 |
| URL: | http://cophylogeny.net/ |
| NeedsCompilation: | no |
| CRAN checks: | kdetrees results |
| Package source: | kdetrees_0.1.2.tar.gz |
| MacOS X binary: | kdetrees_0.1.2.tgz |
| Windows binary: | kdetrees_0.1.2.zip |
| Reference manual: | kdetrees.pdf |
| Vignettes: |
Using KDETrees KDETrees Simulation |