kdetrees: Nonparametric method for identifying discordant phylogenetic trees

A non-parametric method for identifying potential outlying observations in a collection of phylogenetic trees based on the methods of Owen and Provan (2011). Such discordant trees may indicate problems with sequence annotation or tree reconstruction, or they may represent interesting biological phenomena, such as horizontal gene transfers.

Version: 0.1.5
Depends: R (≥ 2.15.1)
Imports: ape, distory, ggplot2
Published: 2014-05-30
Author: Grady Weyenberg and Ruriko Yoshida
Maintainer: Grady Weyenberg <grady.weyenberg at uky.edu>
License: GPL-2
URL: http://github.com/grady/kdetrees
NeedsCompilation: no
Citation: kdetrees citation info
Materials: ChangeLog
In views: Phylogenetics
CRAN checks: kdetrees results

Downloads:

Reference manual: kdetrees.pdf
Vignettes: kdetrees Manual
KDETrees Simulation
Package source: kdetrees_0.1.5.tar.gz
Windows binaries: r-devel: kdetrees_0.1.5.zip, r-release: kdetrees_0.1.5.zip, r-oldrel: kdetrees_0.1.5.zip
OS X Snow Leopard binaries: r-release: kdetrees_0.1.5.tgz, r-oldrel: kdetrees_0.1.5.tgz
OS X Mavericks binaries: r-release: kdetrees_0.1.5.tgz
Old sources: kdetrees archive