kdetrees: Nonparametric method for identifying discordant trees

Given a set of phylogenetic trees on a group of taxa (for example trees based on individual gene sequences), we present a method for identifying a subset of trees which are discordant with the other trees in the set. These discordant trees may arise from either biologically interesting phenomena (horizontal gene transfers, for example) or more mundane sequencing or annotation errors.

Version: 0.1.3
Depends: R (≥ 2.15.1)
Imports: ape, distory, ggplot2
Suggests: optparse
Published: 2013-08-21
Author: Grady Weyenberg and Peter Huggins
Maintainer: Ruriko Yoshida <ruriko.yoshida at uky.edu>
License: GPL-2
URL: http://cophylogeny.net/
NeedsCompilation: no
CRAN checks: kdetrees results

Downloads:

Reference manual: kdetrees.pdf
Vignettes: Using KDETrees
KDETrees Simulation
Package source: kdetrees_0.1.3.tar.gz
OS X binary: kdetrees_0.1.3.tgz
Windows binary: kdetrees_0.1.3.zip
Old sources: kdetrees archive