ktspair: k-Top Scoring Pairs for Microarray Classification

These functions compute the k best pairs of genes used to classify samples based on the relative rank of the genes expression within each profile. A score based on the sensitivity and the specificity is calculated for every possible pair. The k pairs with the highest score will be selected with the restriction that a gene can appear in at most one pair. The value of k is either set as a parameter chosen by the user or computed through crossvalidation. Other functions related to the k-TSP are also available, for example the functions prediction, summary, plot, etc. can be found in the package.

Version: 1.0
Depends: R (≥ 2.2.1), Biobase (≥ 2.4.0)
Published: 2011-12-23
Author: Julien Damond
Maintainer: Julien Damond <julien.damond at gmail.com>
License: GPL-2
NeedsCompilation: yes
CRAN checks: ktspair results

Downloads:

Reference manual: ktspair.pdf
Package source: ktspair_1.0.tar.gz
Windows binaries: r-devel: ktspair_1.0.zip, r-release: ktspair_1.0.zip, r-oldrel: ktspair_1.0.zip
OS X El Capitan binaries: r-release: ktspair_1.0.tgz
OS X Mavericks binaries: r-oldrel: ktspair_1.0.tgz

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