lmbc: Linear Model Bias Correction for RNA-Seq Data

This is the package for implementing the method in "Bias Correction in RNA-Seq Short-read Counts using Penalized Regression." It first using a penalized regression to determine an appropriate surrounding sequence, then refits the model using the dinucleotide expansion.

Version: 0.9.1
Depends: mseq, lars
Published: 2012-02-03
Author: David Dalpiaz
Maintainer: David Dalpiaz <dalpiaz2 at illinois.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.r-project.org
NeedsCompilation: no
CRAN checks: lmbc results

Downloads:

Reference manual: lmbc.pdf
Package source: lmbc_0.9.1.tar.gz
Windows binaries: r-devel: lmbc_0.9.1.zip, r-release: lmbc_0.9.1.zip, r-oldrel: lmbc_0.9.1.zip
OS X Snow Leopard binaries: r-release: lmbc_0.9.1.tgz, r-oldrel: lmbc_0.9.1.tgz
OS X Mavericks binaries: r-release: lmbc_0.9.1.tgz
Old sources: lmbc archive