lymphclon: Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates

We provide a clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%.

Version: 1.2.3
Depends: R (≥ 2.15.0)
Imports: VGAM, MASS, expm, corpcor
Published: 2013-11-11
Author: Yi Liu [aut, cre], Richard A. Olshen [aut], Andrew Z. Fire [aut], Scott D. Boyd [aut]
Maintainer: Yi Liu <liuyipei at stanford.edu>
License: LGPL-2
NeedsCompilation: no
CRAN checks: lymphclon results

Downloads:

Reference manual: lymphclon.pdf
Package source: lymphclon_1.2.3.tar.gz
Windows binaries: r-devel: lymphclon_1.2.3.zip, r-release: lymphclon_1.2.3.zip, r-oldrel: lymphclon_1.2.3.zip
OS X Snow Leopard binaries: r-release: lymphclon_1.2.3.tgz, r-oldrel: lymphclon_1.2.3.tgz
OS X Mavericks binaries: r-release: lymphclon_1.2.3.tgz
Old sources: lymphclon archive