mapfuser: Construct Consensus Genetic Maps and Estimate Recombination Rates

Construct consensus genetic maps with LPmerge, see Endelman and Plomion (2014) <doi:10.1093/bioinformatics/btu091> and model the relationship between physical distance and genetic distance using thin-plate regression splines, see Wood (2003) <doi:10.1111/1467-9868.00374>. Perform quality control on input data and visualise intermediate steps.

Version: 0.1.2
Depends: igraph
Imports: dplyr, ggplot2, mgcv, doParallel, parallel, foreach, stringi, plotly, visNetwork, LPmerge, lazyeval, tidyr
Suggests: knitr, rmarkdown
Published: 2017-10-10
Author: Dennis van Muijen, Ram Kumar Basnet, Nathalie J. Dek
Maintainer: Dennis van Muijen <d.van.muijen at rijkzwaan.nl>
License: GPL-3
NeedsCompilation: no
CRAN checks: mapfuser results

Downloads:

Reference manual: mapfuser.pdf
Vignettes: Working with the MapFuser package
Package source: mapfuser_0.1.2.tar.gz
Windows binaries: r-devel: mapfuser_0.1.2.zip, r-release: mapfuser_0.1.2.zip, r-oldrel: mapfuser_0.1.2.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: mapfuser_0.1.2.tgz

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