metaboGSE: Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1101/200964>).

Version: 1.0.2
Depends: R (≥ 3.4.0), sybil (≥ 2.0.4), AnnotationDbi (≥ 1.32.3), ape (≥ 3.3), topGO (≥ 2.24.0)
Imports: utils, stats, methods, parallel, grDevices, graphics, Matrix
Suggests: clpAPI (≥ 1.2.6), glpkAPI (≥ 1.2.11), KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown
Published: 2018-04-13
Author: Van Du T. Tran [aut, cre], Marco Pagni [aut]
Maintainer: Van Du T. Tran <thuong.tran at sib.swiss>
License: GPL-3
NeedsCompilation: no
Citation: metaboGSE citation info
CRAN checks: metaboGSE results

Downloads:

Reference manual: metaboGSE.pdf
Vignettes: metaboGSE - integrating RNA-seq data and metabolic networks
Package source: metaboGSE_1.0.2.tar.gz
Windows binaries: r-devel: metaboGSE_1.0.2.zip, r-release: metaboGSE_1.0.2.zip, r-oldrel: metaboGSE_1.0.2.zip
OS X binaries: r-release: metaboGSE_1.0.2.tgz, r-oldrel: not available
Old sources: metaboGSE archive

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