nanostringr: Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

Provides quality control (QC), normalization, and batch effect correction operations for 'NanoString nCounter' data, Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are used to determine which samples passed or failed QC. Gene expression should first be normalized to housekeeping genes, before a reference-based approach is used to adjust for batch effects. Raw NanoString data can be imported in the form of Reporter Code Count (RCC) files.

Version: 0.1.4
Depends: R (≥ 3.5.0)
Imports: assertthat, ccaPP, dplyr, epiR, magrittr, purrr, rlang
Suggests: covr, knitr, rmarkdown, testthat
Published: 2019-05-09
Author: Derek Chiu [aut, cre], Aline Talhouk [aut], Samuel Leung [aut]
Maintainer: Derek Chiu <dchiu at bccrc.ca>
BugReports: https://github.com/OVCARE/nanostringr/issues
License: MIT + file LICENSE
URL: https://github.com/OVCARE/nanostringr, https://ovcare.github.io/nanostringr
NeedsCompilation: no
Citation: nanostringr citation info
Materials: NEWS
CRAN checks: nanostringr results

Downloads:

Reference manual: nanostringr.pdf
Vignettes: nanostringr Vignettes
Package source: nanostringr_0.1.4.tar.gz
Windows binaries: r-devel: nanostringr_0.1.4.zip, r-release: nanostringr_0.1.4.zip, r-oldrel: nanostringr_0.1.4.zip
OS X binaries: r-release: nanostringr_0.1.4.tgz, r-oldrel: nanostringr_0.1.4.tgz
Old sources: nanostringr archive

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