netClass: netClass: An R Package for Network-Based Biomarker Discovery

netClass is an R package for network-based feature (gene) selection for biomarkers discovery via integrating biological information. This package adapts the following 5 algorithms for classifying and predicting gene expression data using prior knowledge: 1) average gene expression of pathway (aep); 2) pathway activities classification (PAC); 3) Hub network Classification (hubc); 4) filter via top ranked genes (FrSVM); 5) network smoothed t-statistic (stSVM).

Version: 1.2.1
Depends: R (≥ 2.14), kernlab
Imports: AnnotationDbi, Matrix, ROCR, graph, igraph, samr
Suggests: parallel, Biobase, KEGG.db, pathClass
Published: 2013-12-03
Author: Yupeng Cun
Maintainer: Yupeng Cun <yupeng.cun at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: netClass results


Reference manual: netClass.pdf
Package source: netClass_1.2.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: netClass_1.2.1.tgz
Old sources: netClass archive


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