opm: Tools for analysing OmniLog(R) Phenotype Microarray data

Tools for analysing OmniLog(R) and MicroStation(TM) phenotype microarray (PM) data as produced by the devices distributed by BIOLOG Inc., including plotting, aggregating (estimating curve parameters), comparing and discretising PM data, creating phylogenetic formats and reports for taxonomic journals, drawing the PM analysis results in biochemical pathway graphs optionally including genome annotations, running multiple comparisons of means, integrating metadata, using the YAML format for the storage of data and metadata, and batch conversion of large numbers of files.

Version: 1.0.24
Depends: R (≥ 3.0.0)
Imports: methods, lattice, parallel, boot, hwriter, plotrix, Ckmeans.1d.dp, pkgutils (≥ 0.5-0), yaml (≥ 2.1.7), splines, mgcv, grofit (≥ 1.1), rjson (≥ 0.2.12), nlme
Suggests: optparse, gplots, opmdata (≥ 0.4-0), testthat, multcomp, KEGGREST, pathview, randomForest
Published: 2013-12-17
Author: Markus Goeker, with contributions by Benjamin Hofner, Lea A.I. Vaas, Johannes Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker <markus.goeker at dsmz.de>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://opm.dsmz.de/
NeedsCompilation: no
Citation: opm citation info
Materials: NEWS ChangeLog
CRAN checks: opm results


Reference manual: opm.pdf
Vignettes: Substrate information in opm
Using opm
Package source: opm_1.0.24.tar.gz
MacOS X binary: opm_1.0.24.tgz
Windows binary: opm_1.0.24.zip
Old sources: opm archive

Reverse dependencies:

Reverse depends: opmdata