opm: Tools for analysing OmniLog(R) Phenotype Microarray data
Tools for analysing OmniLog(R) Phenotype Microarray (PM)
data as produced by the device distributed by BiOLOG Inc.,
including plotting, aggregating (estimating curve parameters),
comparing and discretizing PM data, creating phylogenetic
formats and reports for taxonomic journals, integrating
metadata, using the YAML format for the storage of data and
metadata, and batch conversion of large numbers of files.
| Version: |
0.5-0 |
| Depends: |
R (≥ 2.10.0), grofit |
| Imports: |
methods, lattice, boot, hwriter, plotrix |
| Suggests: |
testthat, yaml (≥ 2.1.3), multicore, optparse, gplots, Ckmeans.1d.dp |
| Published: |
2012-05-20 |
| Author: |
Markus Goeker, with contributions by Lea A.I. Vaas, Johannes
Sikorski, Nora Buddruhs and Anne Fiebig |
| Maintainer: |
Markus Goeker <markus.goeker at dsmz.de> |
| License: |
GPL (≥ 2) |
| URL: |
http://www.dsmz.de/research/microorganisms/projects/analysis-of-omnilog-phenotype-microarray-data.html |
| Citation: |
opm citation info |
| CRAN checks: |
opm results |
Downloads: