outbreaker: Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information.

Version: 1.1-1
Depends: R (≥ 3.0.0)
Imports: utils, ape, igraph, adegenet, parallel
Suggests: EpiEstim
Published: 2013-12-30
Author: Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil Ferguson
Maintainer: Thibaut Jombart <t.jombart at imperial.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://sites.google.com/site/therepiproject/r-pac/outbreaker
NeedsCompilation: yes
Citation: outbreaker citation info
Materials: ChangeLog
CRAN checks: outbreaker results

Downloads:

Reference manual: outbreaker.pdf
Package source: outbreaker_1.1-1.tar.gz
OS X binary: outbreaker_1.1-1.tgz
Windows binary: outbreaker_1.1-1.zip
Old sources: outbreaker archive