outbreaker: Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information.

Version: 1.1-3
Depends: R (≥ 3.0.0)
Imports: utils, ape, igraph, adegenet, parallel
Suggests: EpiEstim
Published: 2014-05-08
Author: Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil Ferguson
Maintainer: Thibaut Jombart <t.jombart at imperial.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://sites.google.com/site/therepiproject/r-pac/outbreaker
NeedsCompilation: yes
Citation: outbreaker citation info
Materials: ChangeLog
In views: Phylogenetics
CRAN checks: outbreaker results

Downloads:

Reference manual: outbreaker.pdf
Package source: outbreaker_1.1-3.tar.gz
Windows binaries: r-devel: outbreaker_1.1-3.zip, r-release: outbreaker_1.1-3.zip, r-oldrel: outbreaker_1.1-3.zip
OS X Snow Leopard binaries: r-release: outbreaker_1.1-3.tgz, r-oldrel: outbreaker_1.1-3.tgz
OS X Mavericks binaries: r-release: not available
Old sources: outbreaker archive