paramlink: Parametric Linkage Analysis in R

Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.

Version: 0.9-9
Depends: R (≥ 3.2)
Imports: assertthat, kinship2, graphics, maxLik, stats, utils
Suggests: identity
Published: 2016-10-17
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv at studmed.uio.no>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
SystemRequirements: For the MERLIN wrapper, MERLIN (www.sph.umich.edu/csg/abecasis/merlin) must be installed and pointed to in the PATH environment variable.
Materials: NEWS
CRAN checks: paramlink results

Downloads:

Reference manual: paramlink.pdf
Package source: paramlink_0.9-9.tar.gz
Windows binaries: r-devel: paramlink_0.9-9.zip, r-release: paramlink_0.9-9.zip, r-oldrel: paramlink_0.9-9.zip
OS X Mavericks binaries: r-release: paramlink_0.9-9.tgz, r-oldrel: paramlink_0.9-9.tgz
Old sources: paramlink archive

Reverse dependencies:

Reverse depends: euroMix, Familias, IBDsim, relMix

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