pegas: Population and Evolutionary Genetics Analysis System

Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, and for the analysis of population nucleotide sequences and micro-satellites including coalescence analyses.

Version: 0.9
Depends: R (≥ 2.6.0), ape (≥ 2.4), adegenet
Imports: graphics, utils
Published: 2016-04-16
Author: Emmanuel Paradis [aut, cre, cph], Thibaut Jombart [aut, cph], Klaus Schliep [aut, cph], Alastair Potts [aut, cph], David Winter [aut, cph]
Maintainer: Emmanuel Paradis <Emmanuel.Paradis at ird.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://ape-package.ird.fr/pegas.html
NeedsCompilation: yes
Citation: pegas citation info
Materials: NEWS
In views: Phylogenetics
CRAN checks: pegas results

Downloads:

Reference manual: pegas.pdf
Vignettes: Reading Files
Package source: pegas_0.9.tar.gz
Windows binaries: r-devel: pegas_0.9.zip, r-release: pegas_0.9.zip, r-oldrel: pegas_0.9.zip
OS X Mavericks binaries: r-release: pegas_0.9.tgz, r-oldrel: pegas_0.9.tgz
Old sources: pegas archive

Reverse dependencies:

Reverse depends: spider, StAMPP
Reverse imports: mmod, PopGenReport, poppr, rmetasim, skeleSim, strataG
Reverse suggests: adegenet, BarcodingR, hierfstat

Linking:

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