peptider: Evaluation of Diversity in Nucleotide Libraries

Evaluation of diversity in peptide libraries, including NNN, NNB, NNK/S, and 20/20 schemes. Custom encoding schemes can also be defined. Metrics for evaluation include expected coverage, relative efficiency, and the functional diversity of the library. Peptide-level inclusion probabilities are computable for both the native and custom encoding schemes.

Version: 0.2
Depends: R (≥ 3.0.2)
Imports: discreteRV (≥ 1.2), plyr, dplyr
Suggests: ggplot2
Published: 2015-04-11
Author: Heike Hofmann [aut], Eric Hare [aut, cre], GGobi Foundation [aut]
Maintainer: Eric Hare <erichare at iastate.edu>
BugReports: https://github.com/heike/peptider/issues
License: GPL-3
URL: https://github.com/heike/peptider
NeedsCompilation: no
Materials: README
CRAN checks: peptider results

Downloads:

Reference manual: peptider.pdf
Package source: peptider_0.2.tar.gz
Windows binaries: r-devel: peptider_0.2.zip, r-release: peptider_0.2.zip, r-oldrel: peptider_0.2.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: peptider_0.2.tgz
OS X Mavericks binaries: r-release: peptider_0.2.tgz
Old sources: peptider archive