commit c6682648e5be8bce895596204f88097d09c8a9b9 Author: cameronbracken Date: Mon Mar 19 23:43:41 2012 -0700 Fix xelatex example inst/example/pgfSweave-xelatex-example.Rnw | 8 +++++++- 1 files changed, 7 insertions(+), 1 deletions(-) commit 12811e1632171b5271401c403f5090ff715f1e9e Merge: 879c757 9fe3806 Author: cameronbracken Date: Mon Mar 19 22:57:18 2012 -0700 Merge branch 'concordance' Conflicts: R/pgfSweave.R commit 9fe3806ffce90c6de27ffa974178572c56d6d3b3 Author: cameronbracken Date: Mon Mar 19 22:55:43 2012 -0700 Must use RweaveLatexFinish from R 2.13 to get concordance to work R/pgfSweaveDriver.R | 42 +++++++++++++++++++++++++++++++++++++----- 1 files changed, 37 insertions(+), 5 deletions(-) commit 879c757884095fb923fa804d24a7ac67e81afcac Author: cameronbracken Date: Mon Mar 19 21:58:10 2012 -0700 Move functions R/utilities.R | 33 +++++++++++++++++++++++++++++++++ 1 files changed, 33 insertions(+), 0 deletions(-) commit 2d6ec7a55ae7e5fef7bda67f05870d3e368e560b Author: cameronbracken Date: Mon Mar 19 21:57:30 2012 -0700 Move functions R/pgfSweave.R | 33 --------------------------------- 1 files changed, 0 insertions(+), 33 deletions(-) commit 2aaaec19d2a982766be47adaa853ace2f2bf7d3d Author: cameronbracken Date: Mon Mar 19 21:47:36 2012 -0700 Add option to turn on concordance without setting chunk options R/pgfSweave.R | 1 + R/pgfSweaveDriver.R | 1 + 2 files changed, 2 insertions(+), 0 deletions(-) commit 945372bc843d5b909681839999e56a22243331a6 Author: cameronbracken Date: Mon Mar 19 21:35:08 2012 -0700 Add function to return chunk options for RStudio R/pgfSweave.R | 29 +++++++++++++++++++++++++++++ R/pgfSweaveDriver.R | 3 +-- 2 files changed, 30 insertions(+), 2 deletions(-) commit 389307152468bf6f4b9a1d781ccf8f2a9a6f219b Merge: 32b5610 f44e984 Author: cameronbracken Date: Thu Mar 15 21:50:38 2012 -0700 Merge branch 'master' into concordance commit f44e984217a3645a093f1a3921a633fdfe598965 Author: cameronbracken Date: Thu Mar 15 21:47:39 2012 -0700 Move vignette to 'vignettes' directory getting rid of NOTE ChangeLog | 30 + inst/doc/fig-normalSweave.pdf | Bin 4622 -> 0 bytes inst/doc/fig-pgfSweave-hist.pgf | 234 ----- inst/doc/fig-pgfSweave-tikz-hist.pdf | Bin 28468 -> 0 bytes inst/doc/fig-pgfSweave-tikz-hist.tikz | 97 -- inst/doc/pgfSweave-example-Rnw.in | 47 - inst/doc/pgfSweave-example-tex.in | 432 -------- inst/doc/pgfSweave-example.pdf | Bin 77314 -> 0 bytes inst/doc/pgfSweave.Rnw | 1084 ------------------- inst/doc/pgfSweave.pdf | Bin 281270 -> 0 bytes inst/doc/pgfSweave_hans.Rnw | 379 ------- inst/doc/pgfSweave_hans.pdf | Bin 236197 -> 0 bytes inst/example/pgfSweave-example.Rnw | 2 + inst/example/pgfSweave-latex-example.Rnw | 2 + inst/example/pgfSweave-xelatex-example.Rnw | 4 +- inst/misc/vignette-src/Makefile | 9 +- inst/misc/vignette-src/fig-pgfSweave-hist.eps | 194 ++++ inst/misc/vignette-src/fig-pgfSweave-hist.pgf | 248 +++++ .../misc/vignette-src/fig-pgfSweave-tikz-hist.tikz | 95 ++ .../vignette-src/pgfSweave-vignette-source.Rnw | 3 + inst/vignettes/fig-normalSweave.pdf | Bin 0 -> 4627 bytes inst/vignettes/fig-pgfSweave-hist.pgf | 248 +++++ inst/vignettes/fig-pgfSweave-tikz-hist.pdf | Bin 0 -> 28459 bytes inst/vignettes/fig-pgfSweave-tikz-hist.tikz | 95 ++ inst/vignettes/pgfSweave-example-Rnw.in | 49 + inst/vignettes/pgfSweave-example-tex.in | 439 ++++++++ inst/vignettes/pgfSweave-example.pdf | Bin 0 -> 79275 bytes inst/vignettes/pgfSweave-vignette-source.pdf | Bin 0 -> 282762 bytes inst/vignettes/pgfSweave.Rnw | 1086 ++++++++++++++++++++ inst/vignettes/pgfSweave.pdf | Bin 0 -> 281948 bytes inst/vignettes/pgfSweave_hans.Rnw | 379 +++++++ inst/vignettes/pgfSweave_hans.pdf | Bin 0 -> 236197 bytes 32 files changed, 2878 insertions(+), 2278 deletions(-) commit 32b561093aff658a4d751485a561e555b40ecba8 Merge: 00185df 7b2454d Author: cameronbracken Date: Thu Mar 15 00:46:51 2012 -0700 Merge branch 'master' into concordance Conflicts: R/pgfSweaveDriver.R commit 7b2454db7cfc952425b8673045f324066e314790 Author: cameronbracken Date: Thu Mar 15 00:43:00 2012 -0700 Modifications for check, rebuild vignette .Rinstignore | 1 + ChangeLog | 251 ++++++++++++++++++++ NAMESPACE | 2 +- R/pgfSweaveDriver.R | 27 +- inst/doc/Sweave.sty | 33 --- inst/doc/fig-normalSweave.pdf | Bin 0 -> 4622 bytes inst/doc/fig-pgfSweave-hist.pgf | 234 ++++++++++++++++++ inst/doc/fig-pgfSweave-tikz-hist.pdf | Bin 0 -> 28468 bytes inst/doc/fig-pgfSweave-tikz-hist.tikz | 97 ++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 12554 -> 0 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16274 -> 0 bytes inst/doc/figs/fig-pgfSweave-hist.pgf | 248 ------------------- inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 35472 -> 0 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 108 --------- inst/doc/pgfSweave-example-tex.in | 17 +- inst/doc/pgfSweave-example.pdf | Bin 77979 -> 77314 bytes inst/doc/pgfSweave.Rnw | 59 ++--- inst/doc/pgfSweave.pdf | Bin 289790 -> 281270 bytes inst/misc/vignette-src/Makefile | 14 +- inst/misc/vignette-src/Sweave.sty | 33 --- .../vignette-src/pgfSweave-vignette-source.Rnw | 4 +- man/pgfSweaveDriver.Rd | 15 +- 22 files changed, 650 insertions(+), 493 deletions(-) commit 8f00570ea40b0bba322c246e4e0c4333a96f8c50 Author: cameronbracken Date: Thu Mar 15 00:19:27 2012 -0700 Update NEWS and DESCRIPTION for new version 1.3.0 DESCRIPTION | 51 ++++++++++++++++++++++++++++++++++----------------- NEWS | 14 +++++++++++++- 2 files changed, 47 insertions(+), 18 deletions(-) commit 00185dfe1c20dfc272ce04d0b7d69f32d31884c6 Author: cameronbracken Date: Thu Mar 15 00:16:51 2012 -0700 First crack at correct concordance, merge aecay R/pgfSweaveDriver.R | 50 +++++++++++++++++-------------------- inst/doc/Sweave.sty | 33 ------------------------ inst/misc/vignette-src/Sweave.sty | 33 ------------------------ 3 files changed, 23 insertions(+), 93 deletions(-) commit ec4c2e65e65abdc4beff5f85956b171686f35256 Merge: 6365251 02e1264 Author: cameronbracken Date: Wed Mar 14 23:30:24 2012 -0700 Merge branch 'concordance-aecay' into concordance Conflicts: R/pgfSweaveDriver.R commit 63652515e771b9e1e7a6a519cb07d1c07fb3a098 Merge: 9ec3a2d f339a64 Author: cameronbracken Date: Wed Mar 14 23:25:44 2012 -0700 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit 9ec3a2d0bcc0402a0b88025f18d3511815fcd61b Author: cameronbracken Date: Wed Mar 14 23:23:02 2012 -0700 Roxegenize docs NAMESPACE | 15 ++-- R/pgfSweave.R | 1 + R/pgfSweaveDriver.R | 10 ++- man/pgfSweave.Rd | 170 +++++++++++++++++++++++++++--------------------- man/pgfSweaveDriver.Rd | 157 ++++++++++++++++++++++++--------------------- 5 files changed, 198 insertions(+), 155 deletions(-) commit 184c07a447677a54341e92dea2494286f2372c04 Merge: cb36897 bf5b655 Author: cameronbracken Date: Wed Mar 14 22:38:04 2012 -0700 Merge branch 'docs' commit cb3689772db07d3a8d65ecda639a7f7107495ea4 Author: cameronbracken Date: Wed Mar 14 22:18:45 2012 -0700 Fix link in docs, fixed GH-35 man/pgfSweaveDriver.Rd | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit cea3c877827bc1a7b7b4e47548ee43fc4b75c814 Author: cameronbracken Date: Wed Mar 14 22:13:54 2012 -0700 Dont automatically install command line script, it is against the rules. Modify the install scrip to be called from a regular session so the user can install it themselves later. NEWS | 7 ++++++- R/pgfSweave.R | 4 ++++ exec/install-script.R | 7 +++---- src/Makevars | 6 ------ src/dummy.c | 8 -------- 5 files changed, 13 insertions(+), 19 deletions(-) commit 4d4f44bc633f840e61c0054dbf2d13f560ad5e52 Author: cameronbracken Date: Wed Mar 14 22:01:04 2012 -0700 Get rid of .onAttach, it didnt do anything and get rid of package loading in .onLoad R/zzz.R | 14 -------------- 1 files changed, 0 insertions(+), 14 deletions(-) commit f339a643406dbb7a7ecd9ec9b249b02163543f35 Merge: 9cc0095 d5b04a6 Author: Cameron Bracken Date: Sun Feb 26 19:10:25 2012 -0800 Merge pull request #39 from psibre/master xelatex example updates commit d5b04a651d5fdab7704722c61660db5d56779c5e Author: Ingmar Steiner Date: Mon Feb 13 13:03:03 2012 +0100 modified xelatex example further, particularly for use with fontspec (practically ubiquitous in xelatex documents) Note: the actual fonts used (Times, Courier) may not be available everywhere. For details on the potential ae conflict of Sweave and fontspec, see, e.g., http://www.theresearchkitchen.com/archives/118 inst/example/pgfSweave-xelatex-example.Rnw | 31 +++++++++++++++++++-------- 1 files changed, 22 insertions(+), 9 deletions(-) commit 871fc2171ee70439dce79b3e93bf3f197e350dfd Author: Ingmar Steiner Date: Mon Feb 13 11:49:52 2012 +0100 updated xelatex example and softened warning; if xelatex is called with -8bit option, generated makefile is not malformed, and does not need to be hacked with sed or perl see for example, http://tex.stackexchange.com/a/14776 inst/example/Makefile | 9 +++++++-- inst/example/pgfSweave-xelatex-example.Rnw | 5 ++--- 2 files changed, 9 insertions(+), 5 deletions(-) commit 9cc009512dd0968a17ba056deab5b56b55a58534 Author: cameronbracken Date: Thu Dec 1 14:51:54 2011 -0700 Importing cacheSweave doesnt work, need a dependency DESCRIPTION | 2 +- NAMESPACE | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) commit 6e2d0a3858a883e87bc4d1648c917e7880d9b20c Author: cameronbracken Date: Thu Dec 1 14:51:12 2011 -0700 Add support for figs.only option to Sweave (TRUE by defualt) R/pgfSweaveDriver.R | 5 +++-- 1 files changed, 3 insertions(+), 2 deletions(-) commit 413d1d6404669a190c27541e6357feca7520f9f0 Author: cameronbracken Date: Mon Aug 22 12:39:35 2011 -0600 Add global option pgfSweaveNoHighlight to disable printing of highlight definitions (they are currently always printed.) Set the options to any other value than NULL to disable printing of the definitions e.g. options(pgfSweaveNoHighlight=TRUE) R/pgfSweaveDriver.R | 42 ++++++++++++++++++++++-------------------- 1 files changed, 22 insertions(+), 20 deletions(-) commit bf5b65532c9ed6f9f88d876fc2c88ecfc74cd0f2 Author: cameronbracken Date: Mon Aug 22 12:37:20 2011 -0600 Roxygenize docs R/pgfSweave.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/pgfSweaveDriver.R | 57 ++++++++++++++++++++++++++ 2 files changed, 166 insertions(+), 1 deletions(-) commit fc21a9d22861f6739d8765aa3330ca498093cfd0 Author: cameronbracken Date: Fri Jul 8 14:20:41 2011 -0600 Can now specify your installed PGF version in your .Rprofile to circumvent the check at startup, `options(pgfversion = "2.10")`; This gets the package load time down to a bare minimum, the rest of the time is from loading other packages: $Rcpp [1] 0.314 $parser [1] 0.044 $codetools [1] 0.029 $formatR [1] 0.029 $filehash [1] 0.094 $stashR [1] 0.067 $tikzDevice [1] 0.094 $highlight [1] 0.088 $pgfSweave [1] 0.044 packs <- c('Rcpp', 'parser', 'codetools', 'formatR', 'filehash', 'tikzDevice', 'highlight', 'stashR', 'pgfSweave') ti <- list() for(p in packs) ti[[p]] <- system.time(suppressPackageStartupMessages(library(p,character.only=TRUE))) R/zzz.R | 25 +++++++++++++++++++------ 1 files changed, 19 insertions(+), 6 deletions(-) commit 9264763b9dae55c032e23018001cb57fd6bcb83d Author: cameronbracken Date: Fri Jul 8 13:16:17 2011 -0600 Move optparse to 'Enhances' and add a check for it in the command line script. DESCRIPTION | 4 +++- exec/pgfsweave | 1 + exec/pgfsweave-script.R | 3 ++- 3 files changed, 6 insertions(+), 2 deletions(-) commit 02e12643cd3488f690f6dc47f4d0977d4858df26 Author: Aaron Ecay Date: Sun Jun 19 18:07:51 2011 -0400 The stream is already open; reopening gives a warning. R/pgfSweaveDriver.R | 1 - 1 files changed, 0 insertions(+), 1 deletions(-) commit 2f90e0d697e9aad8a3e07bc78073f5cb59c4a7c9 Author: Aaron Ecay Date: Thu Jun 16 18:39:24 2011 -0400 Fix bookkeeping of output lines. Sweave keeps track of what lines in the weaved output correspond to what lines in the source. This is useful for programs like the patchDVI library, which allow one to click on a spot in the compiled PDF file and be taken to the line in the Rnw file which generated that portion of the PDF. Previously, pgfSweave was mangling this info. This commit introduces a helper function through which all code-chunk output should be passed. As a side effect, it moves a lot of bolierplate into the helper function, cleaning up the body of the pgfSweaveRunCode function. R/pgfSweaveDriver.R | 134 ++++++++++++++++++++++----------------------------- 1 files changed, 58 insertions(+), 76 deletions(-) commit f1e4d03c3ab7e9014b6a22dd695f4cf5007a5649 Author: cameronbracken Date: Tue May 31 12:25:29 2011 -0600 Fix spacing bug for highlight=F, tidy=T, wasn't caught with previous spacing fixes, GH-31 R/pgfSweaveDriver.R | 3 --- 1 files changed, 0 insertions(+), 3 deletions(-) commit 54e1c783f5162251c9eb2c7fed997cf931f43bc7 Merge: e13ae66 ec0225e Author: cameronbracken Date: Sat May 28 17:39:22 2011 -0600 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit e13ae6680c28237ba79e509a1e95a4fea425ac3f Author: cameronbracken Date: Sat May 28 17:22:17 2011 -0600 Fix typos in the vignette ChangeLog | 110 ++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2839 -> 12554 bytes inst/doc/figs/fig-pgfSweave-hist.pgf | 180 +++++++++++--------- inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28507 -> 35472 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 77 +++++---- inst/doc/pgfSweave-example-tex.in | 26 ++-- inst/doc/pgfSweave-example.pdf | Bin 78304 -> 77979 bytes inst/doc/pgfSweave.Rnw | 58 +++--- inst/doc/pgfSweave.pdf | Bin 279712 -> 289790 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 6 +- 10 files changed, 294 insertions(+), 163 deletions(-) commit ec0225ef4a84f66a77023760ba1f3c742d68ad55 Merge: 29a4b9a 50566c1 Author: Cameron Bracken Date: Mon May 9 11:52:35 2011 -0700 Merge pull request #30 from lq/master caching does not work properly when keep.source=TRUE commit 29a4b9ae44804fda444c3f8fd4b04c94a1a84bce Author: cameronbracken Date: Wed May 4 16:29:09 2011 -0600 Hidden option to access the `size` parameter to highlight, GH-28 R/pgfSweaveDriver.R | 4 +++- 1 files changed, 3 insertions(+), 1 deletions(-) commit 50566c11734cb8719c0b33c06df7578711259a32 Author: Qiang Li Date: Wed May 4 01:11:42 2011 +0800 fixed: keep.source breaks cache R/cacheSweaveUnexportedFunctions.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 0cdf5785592ee6b94a40aeb72ed91253cac51b37 Merge: c53f9f8 dada019 Author: Cameron Bracken Date: Thu Apr 28 17:15:15 2011 -0700 Merged pull request #26 from lq/master. Highlight spacing commit dada019de51c722bf81d06ccd079745b84849b9d Author: Qiang Li Date: Tue Apr 19 18:56:48 2011 +0800 Removed hard newline_latex at the end of {Sinput} Now the ugly hack \vspace{-\baselineskip} is avoided. R/pgfSweaveDriver.R | 10 +++++++--- 1 files changed, 7 insertions(+), 3 deletions(-) commit 1e17cc8e5c3920426ae75e706ecd896c0d5d33be Author: Qiang Li Date: Tue Apr 19 13:19:36 2011 +0800 R/pgfSweaveDriver.R: cancel out the effect of hard newline at the end of Hinput Now we can define Schunk and Hinput based on trivlist, and Soutput based on Verbatim, so that vertical spaces between text/chunk/text and code/output can be individually set with \topsep, e.g. \renewenvironment{Schunk}{\begin{trivlist}\item}{\end{trivlist}} \RequirePackage{fancyvrb} \renewenvironment{Hinput}{\setlength{\topsep}{0pt}\begin{trivlist}\item} {\vspace{-\baselineskip}\end{trivlist}} \RecustomVerbatimEnvironment{Soutput}{Verbatim}{listparameters={\setlength{\topsep}{\smallskipamount}}} R/pgfSweaveDriver.R | 3 ++- 1 files changed, 2 insertions(+), 1 deletions(-) commit e64011b2ed4a89d4592b9d67256ad786c1ca34fd Author: Qiang Li Date: Tue Apr 19 03:08:06 2011 +0800 R/pgfSweaveDriver.R: Removed newline_latex() at the beginning of Sinput. The {Sinput} environment should ensure the newline and determine the surrounding space. R/pgfSweaveDriver.R | 8 ++------ 1 files changed, 2 insertions(+), 6 deletions(-) commit 060c03c571f3a6caeaa116ad855476fb63041053 Author: Qiang Li Date: Mon Apr 18 22:52:05 2011 +0800 R/pgfSweaveDriver.R: Generates Hinput environments instead of Houtput. Houtput seemed strange. It surrounds both input and output, so customization would also affect the results. I made it a inner environment of Schunk just like Sinput, and renamed it to Hinput accordingly. R/pgfSweaveDriver.R | 27 +++++++-------------------- 1 files changed, 7 insertions(+), 20 deletions(-) commit c53f9f81905d1ded6a71ff5de151c0787d8903ec Author: cameronbracken Date: Tue Apr 12 16:37:38 2011 -0600 Fix link in README.md, Issue 24 README.md | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 8a44f21d1315753295883332d57503624ae99b5c Author: cameronbracken Date: Tue Apr 5 16:43:42 2011 -0600 Version 1.2.1 ChangeLog | 107 ++++++++++++++++ DESCRIPTION | 2 +- inst/doc/figs/fig-normalSweave.pdf | Bin 12524 -> 2839 bytes inst/doc/figs/fig-pgfSweave-hist.pgf | 185 ++++++++++++--------------- inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28507 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 67 +++++------ inst/doc/pgfSweave-example-tex.in | 12 ++- inst/doc/pgfSweave-example.pdf | Bin 76347 -> 78304 bytes inst/doc/pgfSweave.Rnw | 2 + inst/doc/pgfSweave.pdf | Bin 288573 -> 279712 bytes inst/misc/vignette-src/Makefile | 3 +- 11 files changed, 234 insertions(+), 144 deletions(-) commit b81ef0e742e77b7f6caaead783cfc2637f7be970 Author: cameronbracken Date: Tue Apr 5 16:43:31 2011 -0600 Update NEWS NEWS | 3 +++ 1 files changed, 3 insertions(+), 0 deletions(-) commit e1b1d11fee5419f1747636461a5af7f46248826f Merge: 629df4f 5536f8f Author: cameronbracken Date: Tue Apr 5 16:26:46 2011 -0600 Merge branch 'rel-patch2' commit 629df4f8c9925ccf1a970d10552153ff26123ced Author: cameronbracken Date: Tue Apr 5 16:26:06 2011 -0600 Only try to call make if the makefile exists R/pgfSweave.R | 12 ++++++------ 1 files changed, 6 insertions(+), 6 deletions(-) commit 5536f8f46e781bb2e8193dcbcbf2265b20612e34 Author: cameronbracken Date: Tue Apr 5 16:15:56 2011 -0600 Apply rel2.patch R/pgfSweaveDriver.R | 23 +++++++++++++++++++++-- 1 files changed, 21 insertions(+), 2 deletions(-) commit d6159fa723942cc7ad361290114e555404430d2f Author: cameronbracken Date: Tue Apr 5 16:05:14 2011 -0600 Slightly change message for re-run external chunks R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit edc5f628bb174fe19ae84884194863d7a1a41557 Author: cameronbracken Date: Tue Apr 5 15:50:57 2011 -0600 Update NEWS NEWS | 5 +++-- 1 files changed, 3 insertions(+), 2 deletions(-) commit ff49d90675be7118283af2120c93499cf9c164cf Author: cameronbracken Date: Tue Apr 5 15:48:58 2011 -0600 XeLaTeX example, see the warning in the file for directions on how to get around the bug in pgf inst/example/pgfSweave-xelatex-example.Rnw | 72 ++++++++++++++++++++++++++++ 1 files changed, 72 insertions(+), 0 deletions(-) commit 2d57ccae18b14134aead7851da22cf8fade8d34a Author: cameronbracken Date: Tue Apr 5 14:55:03 2011 -0600 Fix the internal caching layer so that external graphics are now properly recreated only when the chunk has changed; also fixes the external library dependency feature R/pgfSweaveDriver.R | 21 +++++++++++---------- R/utilities.R | 2 +- 2 files changed, 12 insertions(+), 11 deletions(-) commit 5fc6321fe08d009b07dc89314ab1f8dda0cb7d6f Author: cameronbracken Date: Tue Apr 5 13:24:53 2011 -0600 Add chunk options 'width' and 'height' to the chunk digest; when chages are made to these options but not the chunk code itself, still regenerate the graphic R/utilities.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 7aa7eb28373f601b1d65d09e7b1c2b543c1d3a5a Author: cameronbracken Date: Mon Apr 4 14:45:24 2011 -0600 Add encoding to vignette for R 2.13 ChangeLog | 52 ++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 12749 -> 12524 bytes inst/doc/figs/fig-pgfSweave-hist.pgf | 186 +++++++++++--------- inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28614 -> 28559 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 70 ++++---- inst/doc/pgfSweave-example-tex.in | 10 +- inst/doc/pgfSweave-example.pdf | Bin 78284 -> 76347 bytes inst/doc/pgfSweave.Rnw | 2 + inst/doc/pgfSweave.pdf | Bin 327561 -> 288573 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 2 + 10 files changed, 190 insertions(+), 132 deletions(-) commit 354e7f790cbf28be8fee88dbc4ee61a349770182 Author: cameronbracken Date: Mon Apr 4 14:44:32 2011 -0600 Update News NEWS | 10 ++++++++++ 1 files changed, 10 insertions(+), 0 deletions(-) commit 69700eb5e3bfbef6d743d1d719a5b663c799bc00 Author: cameronbracken Date: Sun Apr 3 21:02:43 2011 -0600 Remove null device code since it can cause problems with grid graphics R/pgfSweaveDriver.R | 5 ----- 1 files changed, 0 insertions(+), 5 deletions(-) commit 1db2157b7f913a011f23c9ac8912b7b265ce983c Author: cameronbracken Date: Sun Apr 3 17:21:07 2011 -0600 Bump version number, recompile vignette to only depend on PGF 2.00 ChangeLog | 51 ++++++ DESCRIPTION | 2 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2960 -> 12749 bytes inst/doc/figs/fig-pgfSweave-hist.pgf | 188 +++++++++----------- inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28614 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 74 ++++---- inst/doc/pgfSweave-example-tex.in | 2 - inst/doc/pgfSweave-example.pdf | Bin 78061 -> 78284 bytes inst/doc/pgfSweave.Rnw | 21 +-- inst/doc/pgfSweave.pdf | Bin 281287 -> 327561 bytes inst/misc/vignette-src/Makefile | 5 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 10 +- 12 files changed, 191 insertions(+), 162 deletions(-) commit 21154a3acba563ecd2cb2586bb02dfad7acf0acb Author: cameronbracken Date: Sun Apr 3 17:20:13 2011 -0600 Allow package to be installed if PGF 2.10 is not available but issue message at startup. R/zzz.R | 9 ++++++--- 1 files changed, 6 insertions(+), 3 deletions(-) commit 1443cf949766b3dcd598a6d94ef799e1abc74c6d Author: cameronbracken Date: Sun Apr 3 17:17:55 2011 -0600 Dont include \tikzexternalfiledependsonfile command because it caused figures to get recompiled every time. Only put in list and make command the first time. R/pgfSweaveDriver.R | 23 ++++++++++++++--------- 1 files changed, 14 insertions(+), 9 deletions(-) commit 103005f9ced1a9e07599f5625a1bd6456441473c Author: cameronbracken Date: Sun Apr 3 17:16:20 2011 -0600 Do not run (pdf)latex initially when makefile exists R/pgfSweave.R | 22 ++- inst/doc/figs/fig-pgfSweave-hist.pgf | 255 ++++++++++++++++++++++++++++ inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 110 ++++++++++++ 3 files changed, 381 insertions(+), 6 deletions(-) commit 224c98c100ecaeb90085b30e5978e3736f97e6f1 Author: cameronbracken Date: Wed Mar 23 17:32:21 2011 -0600 Fix bug where code was chached when cache=F and explicitly turn off externalizaton when external is not TRUE so that custom commands (such as xelatex) can be used. R/pgfSweaveDriver.R | 14 +++++++++++++- inst/tests/tidy.Rnw | 2 +- 2 files changed, 14 insertions(+), 2 deletions(-) commit 52c8ea46d491ce1917c57c979ab8860f0b9c85a8 Author: cameronbracken Date: Wed Mar 23 16:25:58 2011 -0600 Re-add vignette files inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 0 -> 16274 bytes inst/doc/pgfSweave.pdf | Bin 0 -> 281287 bytes 2 files changed, 0 insertions(+), 0 deletions(-) commit 027c008b4685f03fdd3076f3d0cdd233d2eecc37 Author: cameronbracken Date: Wed Mar 23 16:23:40 2011 -0600 Rebuild vignette inst/doc/pgfSweave_hans.pdf | Bin 236197 -> 236197 bytes 1 files changed, 0 insertions(+), 0 deletions(-) commit 40afcea9f28aaee1e02d43ba10efae7381a05cd1 Author: cameronbracken Date: Wed Mar 16 15:56:15 2011 -0600 Update documentation and improve command line script ChangeLog | 14 ++ DESCRIPTION | 2 +- NEWS | 3 + R/pgfSweave.R | 9 +- exec/pgfsweave-script.R | 136 +++++++------------ inst/doc/figs/fig-normalSweave.pdf | Bin 3083 -> 2960 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28559 bytes inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78061 bytes inst/doc/pgfSweave.Rnw | 80 +++++++----- inst/doc/pgfSweave_hans.pdf | Bin 236093 -> 236197 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 80 +++++++----- man/pgfSweave.Rd | 12 +- 12 files changed, 179 insertions(+), 157 deletions(-) commit 881f0fae6aff0dbe021007f6166401df6f030777 Author: cameronbracken Date: Tue Feb 22 13:36:26 2011 -0700 Actually build both vignettes correctly ChangeLog | 19 +++++++++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2965 -> 3083 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28550 -> 28559 bytes inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78117 bytes inst/doc/pgfSweave_hans.pdf | Bin 236093 -> 236093 bytes inst/misc/vignette-src/Makefile | 4 ++-- 6 files changed, 21 insertions(+), 2 deletions(-) commit e61e2260041fa50209ff553e70a44d3733d99b8f Author: cameronbracken Date: Tue Feb 22 13:31:47 2011 -0700 Fix automatic building of Hans' vignette ChangeLog | 68 +++++++++++++++++++++++++++++ R/pgfSweaveDriver.R | 2 +- inst/doc/figs/fig-normalSweave.pdf | Bin 3056 -> 2965 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28512 -> 28550 bytes inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78117 bytes inst/doc/pgfSweave.Rnw | 4 +- inst/doc/pgfSweave.pdf | Bin 288991 -> 0 bytes inst/doc/pgfSweave_hans.Rnw | 2 +- inst/doc/pgfSweave_hans.pdf | Bin 0 -> 236093 bytes inst/example/caching.Rnw | 2 +- inst/misc/vignette-src/Makefile | 12 ++++- 11 files changed, 82 insertions(+), 8 deletions(-) commit d7c4386fbd6101d874ca024ab8a27650ba6e9dfe Author: cameronbracken Date: Tue Feb 22 13:13:32 2011 -0700 Fix options call R/pgfSweaveDriver.R | 2 +- inst/doc/pgfSweave.pdf | Bin 288991 -> 288991 bytes 2 files changed, 1 insertions(+), 1 deletions(-) commit d38f61ceb6549a73e070ee20befeafb3027902ae Author: cameronbracken Date: Tue Feb 22 12:11:52 2011 -0700 Update PGF version check to 2.10 R/zzz.R | 12 ++++++------ 1 files changed, 6 insertions(+), 6 deletions(-) commit 0bad74ef4c42e0a33e6dd2e94510c4722524bff9 Author: cameronbracken Date: Tue Feb 22 11:59:02 2011 -0700 Use the correct options function in the driver R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 2ec6cea4fa2c3e1d7531238f27566c0ac24ef78d Author: cameronbracken Date: Mon Feb 21 17:13:58 2011 -0700 Remove everything from the tex.driver option R/pgfSweaveDriver.R | 47 +------------------- .../vignette-src/pgfSweave-vignette-source.Rnw | 2 +- man/pgfSweaveDriver.Rd | 6 +-- 3 files changed, 3 insertions(+), 52 deletions(-) commit 844d9a9d6c95b966a1bdaf3f2e732ad99058d9b2 Author: cameronbracken Date: Mon Feb 21 17:09:21 2011 -0700 Update to the documentation and vignette with recent changes, new example of using tikz externalization library to generate eps graphics ChangeLog | 106 +++++++++++++++ DESCRIPTION | 10 +- NEWS | 26 ++++- README.md | 4 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2965 -> 3056 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16286 -> 0 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26912 -> 28512 bytes inst/doc/pgfSweave-example-Rnw.in | 8 +- inst/doc/pgfSweave-example-tex.in | 32 +++-- inst/doc/pgfSweave-example.pdf | Bin 78139 -> 78117 bytes inst/doc/pgfSweave.Rnw | 135 +++++++++++++++----- inst/doc/pgfSweave.pdf | Bin 278812 -> 288991 bytes inst/doc/pgfSweave_hans.pdf | Bin 236105 -> 0 bytes inst/example/Makefile | 10 +- inst/example/pgfSweave-example.Rnw | 2 + inst/example/pgfSweave-latex-example.Rnw | 50 +++++++ inst/misc/vignette-src/Makefile | 11 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 89 +++++++++++--- inst/tests/Makefile | 2 +- man/pgfSweave.Rd | 29 +++-- 20 files changed, 424 insertions(+), 90 deletions(-) commit 4d07efb597e262913c5112aa712686da9278f043 Author: cameronbracken Date: Tue Feb 8 14:07:39 2011 -0700 Redefine Houtput environment to use \raggedright to avoid the extra space added by flushleft R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit b83eeceb5b7db4c388ddb92140cb5a0c07895a86 Author: cameronbracken Date: Fri Jan 21 10:27:33 2011 -0700 Greatly reduce package load time (from 5 to 1 second) by using import instead of depends DESCRIPTION | 6 +++--- NAMESPACE | 3 +++ R/pgfSweaveDriver.R | 18 +++++++++++------- exec/pgfsweave-script.R | 4 ---- 4 files changed, 17 insertions(+), 14 deletions(-) commit 916336bf42692191836e42a2f4e8b378854121d5 Author: cameronbracken Date: Tue Jan 18 17:33:58 2011 -0700 First cut using the tikz external library, also generate highlighted output in a special environment. See full commit message for details - Use the tikz external library with the `list and make` option. This option allows for externalized graphic dependency checking and parallel compilation of external graphics - The tikz external library with this option uses a slightly different workflow, namely: 1. Run (pdf)latex once to generate a makefile with graphic dependencies 2. Run make to externalize graphics 3. Run (pdf)latex again - pgfSweave() and pgfSweave-script.R have been updated accordingly and now have a new option to specify the number of processors - All the old externalization command stuff has been removed, so no more .sh file! - Instead of the \pgfrealjobname command added, the \tikzexternalize command is added automatically in addition to the - Also use the \tikzexternalfiledependsonfile feature to add dependency on the .tikz file - Externalized graphics now have another layer of crude caching on their own, this was attempted before but now works correctly. A digest of the entire chunk is computed and stored in a stashR database for the chunk (if cache is already TRUE, then the existing db is used). If anything changes in the code chunk at all, including white space, the graphic is updated, otherwise the figure is not regenerated. This also helps a bit for plain pdf and eps output. - Highlighted output is now output in a `Houtput` environment just like the regular Sweave echo'd output. This environment is defined by default to be a `flushleft` environment so that graphics can be centered with \centering or something similar. This environment can also be redefined by the user with \renewenvironment - Move some functions around and add some more comments R/cacheSweaveUnexportedFunctions.R | 73 +++++++++++++- R/pgfSweave.R | 41 ++++---- R/pgfSweaveDriver.R | 194 +++++++++++++++------------------- R/utilities.R | 205 ++++-------------------------------- exec/pgfsweave-script.R | 42 +++++--- inst/example/pgfSweave-example.Rnw | 6 +- 6 files changed, 227 insertions(+), 334 deletions(-) commit 40a152d1531f4f62c101c92ef6afcd3630f148cd Author: cameronbracken Date: Sun Jan 16 16:57:32 2011 -0700 Prep for next release ChangeLog | 152 ++++++++++++++++++++ DESCRIPTION | 2 +- NEWS | 1 + inst/doc/figs/fig-normalSweave.pdf | Bin 2937 -> 2965 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16299 -> 16286 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26907 -> 26912 bytes inst/doc/pgfSweave-example-Rnw.in | 9 +- inst/doc/pgfSweave-example-tex.in | 20 ++- inst/doc/pgfSweave-example.pdf | Bin 76150 -> 78139 bytes inst/doc/pgfSweave.Rnw | 87 ++++++------ inst/doc/pgfSweave.pdf | Bin 276681 -> 278812 bytes inst/doc/pgfSweave_hans.pdf | Bin 236103 -> 236105 bytes inst/misc/vignette-src/Makefile | 13 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 73 +++++----- inst/tests/Makefile | 2 +- 15 files changed, 260 insertions(+), 99 deletions(-) commit fcad9715f3ed976c77c7ac99fa4099123d6e976e Author: cameronbracken Date: Sun Jan 16 16:56:13 2011 -0700 Improve automatic insertion of \pgfrealjobname R/pgfSweaveDriver.R | 66 +++++++++++++++++++++++++++++--------------------- 1 files changed, 38 insertions(+), 28 deletions(-) commit 199bb28ffa62532c8df42500519ef4516c04e5fc Author: cameronbracken Date: Sun Jan 16 14:58:51 2011 -0700 Update links to tidy.source in docs man/pgfSweaveDriver.Rd | 4 ++-- 1 files changed, 2 insertions(+), 2 deletions(-) commit 12ecc4ea27bd259885ab9fc647bd34d2bc7df0eb Author: cameronbracken Date: Sun Jan 16 14:40:42 2011 -0700 Minor cleanup and tweak to example R/pgfSweaveDriver.R | 4 ++-- inst/example/pgfSweave-example.Rnw | 8 ++++---- 2 files changed, 6 insertions(+), 6 deletions(-) commit 8e42d428bc76b86a49685f2c3f631bb37e743c2e Author: cameronbracken Date: Tue Jan 11 15:50:11 2011 -0700 Copy cacheSweave functions and use cacheSweaveEvalWithOpt since the old changes to that function are no longer in use. R/pgfSweaveDriver.R | 4 +- R/utilities.R | 178 ++++++++++++++++++++++++++++++++++++++++--------- inst/example/Makefile | 2 +- 3 files changed, 150 insertions(+), 34 deletions(-) commit d241291787a386c78b3c6554204065e171aa1472 Author: cameronbracken Date: Mon Jan 10 15:47:25 2011 -0700 Cleaning up some more code R/pgfSweaveDriver.R | 2 +- R/zzz.R | 86 ++++++++++++++++++------------------ inst/example/pgfSweave-example.Rnw | 1 + inst/tests/tidy2.Rnw | 4 +- 4 files changed, 47 insertions(+), 46 deletions(-) commit 8c4283c98516de16df5883f59ba055291645245e Author: cameronbracken Date: Mon Jan 10 00:33:31 2011 -0700 Add repo info to README.md README.md | 2 ++ 1 files changed, 2 insertions(+), 0 deletions(-) commit 7465ff4f212ac021778dbca77ba7babbfa80668a Author: cameronbracken Date: Mon Jan 10 00:30:25 2011 -0700 Remove duplicate entry in NEWS NEWS | 1 - 1 files changed, 0 insertions(+), 1 deletions(-) commit 2368a38952e52fae58ca2fef1ab19631c9d0aafa Author: cameronbracken Date: Mon Jan 10 00:28:39 2011 -0700 Remove dead code, comment and format some of driver code R/pgfSweaveDriver.R | 81 +++++++++++++++++++++++++-------------------------- R/utilities.R | 8 ++--- 2 files changed, 43 insertions(+), 46 deletions(-) commit 172dcba3146c14f1ce27ffd94dbd17e167a1d343 Author: cameronbracken Date: Mon Jan 10 00:28:29 2011 -0700 Update NEWS NEWS | 19 ++++++++++--------- 1 files changed, 10 insertions(+), 9 deletions(-) commit d5ccf25b0712a3776d94d6c5891b696c87a1c0ff Author: cameronbracken Date: Mon Jan 10 00:27:18 2011 -0700 Move all new features to github issue tracker, old items to OREADME.md OREADME.md | 52 ++++++++++++++++++++++++++++++++++ README.md | 90 ++--------------------------------------------------------- 2 files changed, 56 insertions(+), 86 deletions(-) commit 2bc528c6a21a6e19bd68ff9de70fdbdf004c0d44 Author: cameronbracken Date: Sun Jan 9 17:42:43 2011 -0700 Fix CRLF (just in case) inst/tests/tidy.Rnw | 7 ++++--- 1 files changed, 4 insertions(+), 3 deletions(-) commit 06ee9f05dfc68fe5ded9703c2d163b029c1c7351 Author: Yihui Xie Date: Sun Jan 9 16:59:00 2011 -0600 use 0.75 is OK now; deparse.tidy() can deal with the case in which inline comments are pushed to the next line R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 4a4652bf4fd978c6c80af42abfaf88e7f714e6b7 Author: Yihui Xie Date: Sun Jan 9 16:57:24 2011 -0600 parse.tidy and deparse.tidy are in formatR now R/utilities.R | 40 ---------------------------------------- 1 files changed, 0 insertions(+), 40 deletions(-) commit 2760c5a76dddeaf97cb2f415e2524e942734ff82 Author: Yihui Xie Date: Sun Jan 9 16:55:43 2011 -0600 trim white spaces, as my first step to touch other people's code R/pgfSweaveDriver.R | 230 +++++++++++++++++++++++++------------------------- R/utilities.R | 56 ++++++------ 2 files changed, 143 insertions(+), 143 deletions(-) commit 98db46a6e251fdc1c01b9546a79bd19f4352dc5d Author: cameronbracken Date: Sun Jan 9 05:45:01 2011 -0700 Incorporate new features from formatR 0.1-7, saves alot of grief, but still a small bug in printing long lines with inline comments. Rebuild Vignette ChangeLog | 211 ++++++++++++++++++++ DESCRIPTION | 2 +- NEWS | 3 +- R/pgfSweaveDriver.R | 55 +++--- R/utilities.R | 31 ++- inst/doc/figs/fig-normalSweave.pdf | Bin 3139 -> 2937 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16297 -> 16299 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26936 -> 26907 bytes inst/doc/pgfSweave-example-Rnw.in | 7 +- inst/doc/pgfSweave-example-tex.in | 8 +- inst/doc/pgfSweave-example.pdf | Bin 27626 -> 76150 bytes inst/doc/pgfSweave.Rnw | 106 +++++++---- inst/doc/pgfSweave.pdf | Bin 258657 -> 276681 bytes inst/misc/vignette-src/Makefile | 4 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 14 +- inst/tests/tidy2.Rnw | 14 +- 16 files changed, 359 insertions(+), 96 deletions(-) commit 05087396230a7436dbb38354324592be9e23031b Author: cameronbracken Date: Fri Jan 7 13:39:40 2011 -0700 Remove debugging code R/pgfSweaveDriver.R | 3 --- inst/example/pgfSweave-example.Rnw | 1 + 2 files changed, 1 insertions(+), 3 deletions(-) commit c542d07aa53eea2e50c9eb6acf42993cfeaabb0c Author: cameronbracken Date: Fri Jan 7 13:32:35 2011 -0700 New example from Yihui Xie, updated existing example inst/example/Makefile | 3 + inst/example/caching.Rnw | 148 ++++++++++++++++++++++++++++++++++++ inst/example/pgfSweave-example.Rnw | 4 +- 3 files changed, 153 insertions(+), 2 deletions(-) commit 9c507a65e552cba1d9ae593e25fd8031c615a166 Author: cameronbracken Date: Fri Jan 7 13:31:57 2011 -0700 Inline comments actually work now with tidy=T R/pgfSweaveDriver.R | 141 ++++++++++++++++++++++++++------------------------ 1 files changed, 73 insertions(+), 68 deletions(-) commit 94dc4f68ac69ebdf18d5eadb4e848f72a0cf6b4d Author: cameronbracken Date: Fri Jan 7 12:18:24 2011 -0700 Inline comments actually working now R/pgfSweaveDriver.R | 24 ++++++------------------ R/utilities.R | 11 +++++++++++ 2 files changed, 17 insertions(+), 18 deletions(-) commit 97855e0a2831109b6b8bf05559271329444d7341 Author: cameronbracken Date: Fri Jan 7 12:16:40 2011 -0700 Tests using tidy and inline comments, from Yihui Xie and Alan Arnholt inst/tests/Makefile | 11 +++++ inst/tests/tidy.Rnw | 21 +++++++++ inst/tests/tidy2.Rnw | 110 ++++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 142 insertions(+), 0 deletions(-) commit 606352f7b7b804f853079f8973cad55d045cf437 Author: cameronbracken Date: Thu Jan 6 17:23:42 2011 -0700 Inline comments are now preserved when tidy=T DESCRIPTION | 4 +- NEWS | 8 ++++- R/pgfSweaveDriver.R | 30 ++++++++++++++++++--- R/utilities.R | 70 +-------------------------------------------------- 4 files changed, 34 insertions(+), 78 deletions(-) commit db16ab329d5ec5a2576c4fd89209c6d79c4de434 Author: cameronbracken Date: Thu Jan 6 15:47:05 2011 -0700 Rebuild pdf version of Hans' Vignette inst/doc/pgfSweave_hans.pdf | Bin 236774 -> 236103 bytes 1 files changed, 0 insertions(+), 0 deletions(-) commit d1bd42a8443ea9708315f22da429c0f532f2a163 Merge: 785d963 99d5bdd Author: cameronbracken Date: Thu Jan 6 15:42:34 2011 -0700 Merge branch 'master' of https://github.com/hans-ekbrand/pgfSweave into hans-ekbrand-master commit 99d5bddc0dfe65a7a5f19993151857cd01f79af5 Author: Hans Ekbrand Date: Thu Jan 6 23:33:52 2011 +0100 removed the reference to the mysterious error message when the cache dir did not exist inst/doc/pgfSweave_hans.Rnw | 3 +-- 1 files changed, 1 insertions(+), 2 deletions(-) commit 4b22d8cc3603ce668abe32387f8737fe9e7a315c Author: Hans Ekbrand Date: Thu Jan 6 23:33:21 2011 +0100 Enhancement: no dots in chunk-name when fig=T and pdf=T inst/doc/pgfSweave_hans.Rnw | 4 +++- 1 files changed, 3 insertions(+), 1 deletions(-) commit 31c020ef40a703b1786f7ce85b9ecf74e5eda7ac Author: Hans Ekbrand Date: Thu Jan 6 23:32:22 2011 +0100 Correction: dvi-files, not encapsulated postscript files inst/doc/pgfSweave_hans.Rnw | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit c457b004ff17e448bfabb201daf1573871019482 Author: Hans Ekbrand Date: Thu Jan 6 23:31:04 2011 +0100 Removing any references to \pgfrealjobname since these are not necessary with pgfSweave 1.1 and above inst/doc/pgfSweave_hans.Rnw | 4 +--- 1 files changed, 1 insertions(+), 3 deletions(-) commit 785d96375024ba9ad762ae1a9542e659f7d007a1 Author: cameronbracken Date: Thu Jan 6 13:59:19 2011 -0700 Updates to the vignette, prepping for next release DESCRIPTION | 4 +- NEWS | 2 + README.md | 2 + inst/example/pgfSweave-example.Rnw | 4 +-- inst/misc/test-for-pgf.tex | 2 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 22 +++++++++++++++---- 6 files changed, 25 insertions(+), 11 deletions(-) commit 4fb9b4eef7f466cecb261052a74d80548b907d4a Author: cameronbracken Date: Thu Jan 6 13:57:10 2011 -0700 Fix for reusing code chunks with keep.source=T, fixes Issue 9 R/pgfSweaveDriver.R | 21 +++++++++++++++++---- 1 files changed, 17 insertions(+), 4 deletions(-) commit 716f33dd47c205c39fc78265ddefa1ffa98aa661 Author: cameronbracken Date: Wed Jan 5 15:30:35 2011 -0700 New Vignette! Courtesy of Hans Ekbrand. inst/doc/pgfSweave_hans.Rnw | 380 +++++++++++++++++++++++++++++++++++++++++++ inst/doc/pgfSweave_hans.pdf | Bin 0 -> 236774 bytes 2 files changed, 380 insertions(+), 0 deletions(-) commit e338a7313ca7b5bc0e7be415bd4263d9bee7888a Author: cameronbracken Date: Mon Jan 3 12:46:35 2011 -0700 Don't produce extra Rplots.pdf file DESCRIPTION | 2 +- NEWS | 7 +- R/pgfSweaveDriver.R | 5 + README.md | 28 +-- inst/doc/pgfSweave.pdf | Bin 258644 -> 258657 bytes inst/example/pgfSweave-example.Rnw | 8 +- inst/example/pgfSweave-example.tex | 424 ------------------------------------ 7 files changed, 21 insertions(+), 453 deletions(-) commit 93accdf3f78829c601e0a35ee111086c71562646 Author: cameronbracken Date: Fri Dec 17 17:11:05 2010 -0700 Update NEWS and version number DESCRIPTION | 4 ++-- NEWS | 13 +++++++++++++ 2 files changed, 15 insertions(+), 2 deletions(-) commit d79d82577d58f2af5c367081ef4d6675c3435982 Author: cameronbracken Date: Fri Dec 17 16:50:53 2010 -0700 Don't fail on installation when the user has a hardcoded working directory exec/install-script.R | 36 ++++++++++++++++++++++-------------- 1 files changed, 22 insertions(+), 14 deletions(-) commit e3543663ab267471d29b80c8dd47143fd4e8b290 Author: cameronbracken Date: Fri Dec 17 16:29:39 2010 -0700 Remove excess browser() call, correctly find arch dependent Rscript R/pgfSweaveDriver.R | 1 - inst/doc/pgfSweave.pdf | Bin 258644 -> 258644 bytes inst/example/pgfSweave-example.Rnw | 2 +- inst/example/pgfSweave-example.tex | 1 + src/Makevars | 2 +- 5 files changed, 3 insertions(+), 3 deletions(-) commit dc89b16767daf9fa5eba9bc16635b96a0704e4e8 Author: cameronbracken Date: Fri Dec 3 11:52:40 2010 -0700 Version 1.1.1 ChangeLog | 18 ++ DESCRIPTION | 4 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2937 -> 3139 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16182 -> 16297 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26895 -> 26936 bytes inst/doc/pgfSweave-example.pdf | Bin 82901 -> 27626 bytes inst/doc/pgfSweave.Rnw | 458 +++++++++++++++++++++++++++-- inst/doc/pgfSweave.pdf | Bin 271887 -> 258644 bytes 8 files changed, 448 insertions(+), 32 deletions(-) commit 6aefd96107e78e2dbec3cd2e05d12e8a04bb44a2 Author: cameronbracken Date: Fri Dec 3 11:42:37 2010 -0700 Actually make highlighting TRUE by default ChangeLog | 37 ++ R/pgfSweaveDriver.R | 4 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2960 -> 2937 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16275 -> 16182 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26946 -> 26895 bytes inst/doc/pgfSweave-example.pdf | Bin 76205 -> 82901 bytes inst/doc/pgfSweave.Rnw | 469 ++------------------ inst/doc/pgfSweave.pdf | Bin 270239 -> 271887 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 11 +- man/pgfSweaveDriver.Rd | 2 +- 10 files changed, 85 insertions(+), 438 deletions(-) commit 185ce5677556e845293214973b45cd42c26977a5 Author: cameronbracken Date: Mon Nov 29 04:36:59 2010 -0700 Updated README README.md | 12 ------------ 1 files changed, 0 insertions(+), 12 deletions(-) commit d5bf42416de481c5855e84ae4af052bb41934c52 Author: cameronbracken Date: Mon Nov 29 04:15:53 2010 -0700 Tidy functionality is now provided as an option that is disabled by default, also fix keep.source - Updated Vignette - Updated NEWS for Version 1.1.0 ChangeLog | 28 ++ DESCRIPTION | 8 +- NEWS | 8 +- R/pgfSweaveDriver.R | 116 ++----- R/utilities.R | 79 ++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2960 -> 2960 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16287 -> 16275 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26849 -> 26946 bytes inst/doc/pgfSweave-example-Rnw.in | 12 +- inst/doc/pgfSweave-example-tex.in | 7 +- inst/doc/pgfSweave-example.pdf | Bin 75856 -> 76205 bytes inst/doc/pgfSweave.Rnw | 86 ++++- inst/doc/pgfSweave.pdf | Bin 262641 -> 270239 bytes inst/example/pgfSweave-example.Rnw | 10 +- inst/example/pgfSweave-example.tex | 413 +++++++++++++++++++- .../vignette-src/pgfSweave-vignette-source.Rnw | 69 +++- man/pgfSweaveDriver.Rd | 7 +- 17 files changed, 696 insertions(+), 147 deletions(-) commit 84540e92f3e2b185ec6cc5ed68cf3721e0e75475 Author: cameronbracken Date: Mon Nov 29 00:24:19 2010 -0700 Add \pgfrealjobname automatically if it does not exist - Make highlighting NOT default - Update docs to include example of highlighting ChangeLog | 21 + NEWS | 3 +- R/pgfSweaveDriver.R | 51 ++- R/utilities.R | 13 + inst/doc/figs/fig-normalSweave.pdf | Bin 3056 -> 2960 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16270 -> 16287 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26900 -> 26849 bytes inst/doc/pgfSweave-example-Rnw.in | 10 +- inst/doc/pgfSweave-example-tex.in | 28 +-- inst/doc/pgfSweave-example.pdf | Bin 77647 -> 75856 bytes inst/doc/pgfSweave.Rnw | 56 +++- inst/doc/pgfSweave.pdf | Bin 239764 -> 262641 bytes inst/example/pgfSweave-example.Rnw | 12 +- inst/example/pgfSweave-example.tex | 410 +------------------- .../vignette-src/pgfSweave-vignette-source.Rnw | 33 ++- man/pgfSweaveDriver.Rd | 7 +- 16 files changed, 193 insertions(+), 451 deletions(-) commit 685894fade10a45d376d35a96add52aa0c7b1ab6 Author: cameronbracken Date: Sat Nov 27 14:10:21 2010 -0700 Highlighting now incorporated with main code, works now with fixes in tidy.souce ChangeLog | 69 +++++ DESCRIPTION | 2 +- R/pgfSweaveDriver.R | 56 +++-- inst/doc/figs/fig-normalSweave.pdf | Bin 2960 -> 3056 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16249 -> 16270 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26894 -> 26900 bytes inst/doc/pgfSweave-example-Rnw.in | 19 +- inst/doc/pgfSweave-example-tex.in | 418 ++++++++++++++++++++++++++++- inst/doc/pgfSweave-example.pdf | Bin 82971 -> 77647 bytes inst/doc/pgfSweave.Rnw | 377 ++++++++++++++++++++++++++- inst/doc/pgfSweave.pdf | Bin 261229 -> 239764 bytes inst/example/pgfSweave-example.Rnw | 6 +- inst/example/pgfSweave-example.tex | 395 ++++++++++++++++++++++++++- 13 files changed, 1287 insertions(+), 55 deletions(-) commit 88079809153bca88523d5d298847b2a6995b973c Merge: 0ae7ffe d788c15 Author: cameronbracken Date: Sat Nov 27 12:20:42 2010 -0700 Merge branch 'highlight' Conflicts: DESCRIPTION NEWS R/pgfSweaveDriver.R inst/example/pgfSweave-example.tex commit 0ae7ffe47b307bb50bc005b19b3cfefb4f45d565 Author: cameronbracken Date: Wed Nov 17 13:13:03 2010 -0700 Update NEWS and DESCRIPTION for next release DESCRIPTION | 4 ++-- NEWS | 9 +++++++++ inst/example/pgfSweave-example.Rnw | 3 ++- inst/example/pgfSweave-example.tex | 3 +++ 4 files changed, 16 insertions(+), 3 deletions(-) commit 6620bb2e158d6f33f988734c967e0037e1c36e78 Author: cameronbracken Date: Wed Nov 17 12:28:51 2010 -0700 Regenerate graphics based on eps file when tex.driver is `latex' ChangeLog | 118 ++++++++++++++++++++ R/pgfSweaveDriver.R | 3 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2987 -> 2960 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16290 -> 16249 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26906 -> 26894 bytes inst/doc/pgfSweave-example-Rnw.in | 2 +- inst/doc/pgfSweave-example.pdf | Bin 82948 -> 82971 bytes inst/doc/pgfSweave.Rnw | 18 +++- inst/doc/pgfSweave.pdf | Bin 260614 -> 261229 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 18 +++- 10 files changed, 153 insertions(+), 6 deletions(-) commit 52d3f783196a7e4a79208e41d497f15fbce5849a Author: cameronbracken Date: Wed Nov 17 11:33:25 2010 -0700 Add "hidden" global option "keep.blank.line" among other things - If tex.driver is "latex" then convert dvi to pdf with dvipdf then to eps with pdftoeps - Move non-driver utility functions to another file R/pgfSweaveDriver.R | 109 ++----------------- R/utilities.R | 92 +++++++++++++++++ inst/example/pgfSweave-example.Rnw | 2 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 2 +- 4 files changed, 106 insertions(+), 99 deletions(-) commit b5cc5f7658cb5975aa0bde80d099a2e8bfe1c3f9 Author: cameronbracken Date: Tue Nov 16 00:46:52 2010 -0700 Fix the tex.driver option from changes in 2.12 and add a dvips command to automatically generate eps files for latex users R/pgfSweaveDriver.R | 125 ++++++++++++++++++++++++++++++++++++++++++++++++-- 1 files changed, 120 insertions(+), 5 deletions(-) commit 2cdfa8afb06db55d4f9f1dbe22ab43f3b4a980d6 Author: cameronbracken Date: Mon Nov 15 17:21:13 2010 -0700 Bump Date for cran release DESCRIPTION | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit dc586b7c280894529cc92d648e40805f2415523f Author: cameronbracken Date: Mon Nov 15 17:09:14 2010 -0700 Finally fixed extra commentd from printing in echo'd output when keep.source=T R/pgfSweaveDriver.R | 21 +++++++++++++++++---- 1 files changed, 17 insertions(+), 4 deletions(-) commit 4f338c3f0605a8236e8b4242c7fee3181a87ae7e Author: cameronbracken Date: Sun Nov 14 16:18:43 2010 -0700 Further fix for wierd comment in echo'd code chunks R/pgfSweaveDriver.R | 4 ++-- R/zzz.R | 4 +--- 2 files changed, 3 insertions(+), 5 deletions(-) commit 77fa60949c3c7d1db997b22607609b64605eb958 Merge: 91166ed 60a21ce Author: cameronbracken Date: Thu Nov 4 11:41:58 2010 -0600 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit 60a21ce3a54486332b8e173dbd23ede84dc78192 Author: cameronbracken Date: Wed Nov 3 15:56:58 2010 -0600 Pull changes to tidy.souce from yihui R/pgfSweaveDriver.R | 182 +++++++++++++++++++++++++-------------------------- 1 files changed, 89 insertions(+), 93 deletions(-) commit c6cab875171e94b4d7b18575567562db65103be5 Author: Yihui Xie Date: Wed Nov 3 16:29:11 2010 -0500 remove #line numbers correctly, and implemented an idea in my mind for long I believe '#comments like this' is bad -- we should add a space between # and the comments. This is rather subjective. R/pgfSweaveDriver.R | 182 ++++++++++++++++++++++++++------------------------- 1 files changed, 93 insertions(+), 89 deletions(-) commit 348368635384b0c5f383c3c370da4d6168a5ae11 Author: cameronbracken Date: Wed Nov 3 13:27:15 2010 -0600 Version 1.0.10 ChangeLog | 108 +++++++++++++++++++++++++++++ DESCRIPTION | 2 +- NEWS | 5 ++ README.md | 3 + inst/doc/figs/fig-normalSweave.pdf | Bin 4489 -> 2987 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16294 -> 16290 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26904 -> 26906 bytes inst/doc/pgfSweave-example-tex.in | 2 +- inst/doc/pgfSweave-example.pdf | Bin 82965 -> 82948 bytes inst/doc/pgfSweave.Rnw | 4 - inst/doc/pgfSweave.pdf | Bin 258836 -> 260614 bytes 11 files changed, 118 insertions(+), 6 deletions(-) commit c022dab0dcadb7b798aa0267897ca985b2f9eadc Author: cameronbracken Date: Wed Nov 3 13:22:56 2010 -0600 Fix for "#line" comments showing up in echo'd code in 2.12.0, fixes issue 1. R/pgfSweaveDriver.R | 3 ++- inst/doc/pgfSweave.pdf | Bin 260062 -> 258836 bytes inst/example/pgfSweave-example.tex | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) commit 91166eda6c7921728aced28e168fdab8a69ce7bd Merge: d222959 91209db Author: cameronbracken Date: Thu Sep 16 22:09:52 2010 -0600 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit d2229595615facb70a8f1f6efff6e5c6179de8dd Author: cameronbracken Date: Thu Sep 16 22:09:22 2010 -0600 Version 1.0.9 DESCRIPTION | 4 ++-- NEWS | 6 ++++++ R/pgfSweaveDriver.R | 4 ++-- man/pgfSweaveDriver.Rd | 7 +++++-- 4 files changed, 15 insertions(+), 6 deletions(-) commit 91209db8f9a9d7b696c187b7302c24271cbcb1a7 Author: cameronbracken Date: Tue Sep 14 00:08:53 2010 -0600 Version 1.0.9 DESCRIPTION | 4 ++-- 1 files changed, 2 insertions(+), 2 deletions(-) commit 29e49c637525b9a766218ab46aa13f29ab5c5a45 Author: cameronbracken Date: Tue Sep 14 00:06:13 2010 -0600 Version 1.0.9 NEWS | 6 ++++++ 1 files changed, 6 insertions(+), 0 deletions(-) commit 08cd5834218a16fb5e1441ce6a33c8a1fb6c3bf1 Author: cameronbracken Date: Tue Sep 14 00:04:13 2010 -0600 Add Rd documentation for sanitize option R/pgfSweaveDriver.R | 4 ++-- man/pgfSweaveDriver.Rd | 7 +++++-- 2 files changed, 7 insertions(+), 4 deletions(-) commit 32fbdf13d899c2dd2ca597f013346a218e492698 Author: cameronbracken Date: Mon Sep 13 21:20:25 2010 -0600 Better printing of options with pgfsweave-script.R exec/pgfsweave-script.R | 8 ++++++-- 1 files changed, 6 insertions(+), 2 deletions(-) commit d788c1506b4c4a05aec986e38fcf0534e1b750e3 Author: cameronbracken Date: Mon Sep 13 17:33:25 2010 -0600 Always add a special newline after highlighted lines R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 915bead6bd425cf28ca6abbd3b6e5886765233d1 Author: cameronbracken Date: Mon Sep 13 17:21:18 2010 -0600 New option `highlight' to color the syntax of echo'd chunks, enabled by default - No ready quite yet, it does not preserve the whit space in comments - A few newlines need to be put in here and there where missing DESCRIPTION | 21 ++- NEWS | 6 + R/pgfSweaveDriver.R | 150 +++++++++++---- README.md | 22 ++- inst/example/pgfSweave-example.Rnw | 6 +- inst/example/pgfSweave-example.tex | 379 +++++++++++++++++++++++++++++++++++- 6 files changed, 519 insertions(+), 65 deletions(-) commit 24d6be79db77ea2b50d222821cf74465233e0186 Merge: 5c6e4ca 99c533d Author: cameronbracken Date: Tue Sep 7 16:55:22 2010 -0600 Merge branch 'master' of github.com:cameronbracken/pgfSweave Conflicts: inst/doc/figs/fig-normalSweave.pdf inst/doc/figs/fig-pgfSweave-hist.pdf inst/doc/figs/fig-pgfSweave-tikz-hist.pdf inst/doc/pgfSweave-example.pdf inst/doc/pgfSweave.Rnw inst/doc/pgfSweave.pdf inst/misc/vignette-src/pgfSweave-vignette-source.Rnw commit 5c6e4cafaac0320d0a43725bc3ea5754031cb013 Author: cameronbracken Date: Tue Sep 7 16:22:11 2010 -0600 Version 1.0.8 - new option `sanitize' which accesses the tikz() option of the same name ChangeLog | 39 ++++++++++++++++++++ DESCRIPTION | 4 +- NEWS | 8 ++++- R/pgfSweaveDriver.R | 8 +++- inst/doc/figs/fig-normalSweave.pdf | Bin 3044 -> 3019 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16199 -> 16294 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26902 -> 26904 bytes inst/doc/pgfSweave-example.pdf | Bin 83289 -> 82965 bytes inst/doc/pgfSweave.Rnw | 4 ++ inst/doc/pgfSweave.pdf | Bin 259847 -> 260062 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 4 ++ man/pgfSweave.Rd | 2 +- 12 files changed, 63 insertions(+), 6 deletions(-) commit 99c533dc684562e8592adf775a6f75b6d84f33c5 Author: cameronbracken Date: Mon Sep 6 21:22:12 2010 -0600 Version 1.0.8 - New chunk option which accesses the tikz() option of the same name ChangeLog | 39 ++++++++++++++++++++ DESCRIPTION | 4 +- NEWS | 8 ++++- R/pgfSweaveDriver.R | 8 +++- inst/doc/figs/fig-normalSweave.pdf | Bin 3044 -> 3048 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16199 -> 17574 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26902 -> 28941 bytes inst/doc/pgfSweave-example.pdf | Bin 83289 -> 88366 bytes inst/doc/pgfSweave.Rnw | 4 ++ inst/doc/pgfSweave.pdf | Bin 259847 -> 294549 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 4 ++ man/pgfSweave.Rd | 2 +- 12 files changed, 63 insertions(+), 6 deletions(-) commit 08a37f83b158d592602b2193b42b90ee4bacc447 Author: cameronbracken Date: Tue Aug 17 11:34:01 2010 -0600 Updated version and added changes to NEWS DESCRIPTION | 4 ++-- NEWS | 5 +++++ README.md | 2 +- 3 files changed, 8 insertions(+), 3 deletions(-) commit bb145cb30dfb68b304f63910824fab60bdd48010 Author: cameronbracken Date: Tue Aug 17 11:20:30 2010 -0600 Better error message when pgf is not present at all R/zzz.R | 4 ++++ 1 files changed, 4 insertions(+), 0 deletions(-) commit 7bbab36054009e9b5964497aeb39776c40b1e4d8 Author: cameronbracken Date: Fri Aug 6 10:38:23 2010 -0600 Version 1.0.6 .gitignore | 1 + ChangeLog | 28 ++++++ DESCRIPTION | 4 +- NEWS | 8 ++- README | 126 ---------------------------- README.md | 128 +++++++++++++++++++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 3140 -> 3044 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17643 -> 16199 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28962 -> 26902 bytes inst/doc/pgfSweave-example.pdf | Bin 88361 -> 83289 bytes inst/doc/pgfSweave.pdf | Bin 294117 -> 259847 bytes 11 files changed, 166 insertions(+), 129 deletions(-) commit 90eca3594203c1f5fefc286040958a8d57441b5f Author: cameronbracken Date: Wed Apr 28 17:46:04 2010 -0600 Incorporating changes from Yihui Xie which preserves comments in echo'd code when keep.source=F R/pgfSweaveDriver.R | 78 +++++++++++++++++++++++++++++++++++++++++++++++++- 1 files changed, 76 insertions(+), 2 deletions(-) commit d8ec8642a7296225877f14a40098fdb43cf92cb8 Author: cameronbracken Date: Thu Apr 8 13:02:12 2010 -0600 Try using predefined R_HOME in Makevars and no GNU Make requirement Add binary attribute to pdf files to avoid merging, rebuild vignette to test .gitattributes | 1 + ChangeLog | 36 +++++++++++++++++++++++++++++ DESCRIPTION | 2 +- inst/doc/figs/fig-normalSweave.pdf | Bin 3056 -> 3140 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17639 -> 17643 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28915 -> 28962 bytes inst/doc/pgfSweave-example.pdf | Bin 88353 -> 88361 bytes inst/doc/pgfSweave.pdf | Bin 293971 -> 294117 bytes src/Makevars | 4 --- 9 files changed, 38 insertions(+), 5 deletions(-) commit a6c2600e7df9b9137c0ef1c0caf6d002df33e36e Author: cameronbracken Date: Tue Apr 6 18:29:32 2010 -0600 Revert Makevars to use GNU make conditional, list GNU make as SystemRequirement DESCRIPTION | 3 ++- src/Makevars | 4 ++++ 2 files changed, 6 insertions(+), 1 deletions(-) commit 0c7ffb21a7b856e6a484004fb7bb211254a9a830 Author: cameronbracken Date: Sun Apr 4 14:44:14 2010 -0600 Add removed example file inst/example/pgfSweave-example.tex | 44 ++++++++++++++++++++++++++++++++++++ 1 files changed, 44 insertions(+), 0 deletions(-) commit c2811c2a1cd9af4cad36391c7f1b2913071543d1 Author: cameronbracken Date: Sun Apr 4 14:42:36 2010 -0600 Version 1.0.5 ChangeLog | 60 +++++++++++++++++++++++++++++ DESCRIPTION | 2 +- NEWS | 3 +- inst/doc/figs/fig-normalSweave.pdf | Bin 3071 -> 3056 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17644 -> 17639 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28919 -> 28915 bytes inst/doc/pgfSweave-example.pdf | Bin 88546 -> 88353 bytes inst/doc/pgfSweave.Rnw | 3 +- inst/doc/pgfSweave.pdf | Bin 290456 -> 293971 bytes 9 files changed, 64 insertions(+), 4 deletions(-) commit 481238dfd60acd0d34d94e4ab0d982dd28dc67be Author: cameronbracken Date: Sun Apr 4 14:19:59 2010 -0600 Code chunks no longer need to be labeled NEWS | 7 + R/cacheSweaveUnexportedFunctions.R | 5 +- R/pgfSweaveDriver.R | 970 ++++++++++---------- inst/misc/vignette-src/Makefile | 2 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 1 + 5 files changed, 480 insertions(+), 505 deletions(-) commit 63435c5aa3ad9f722c3414c7d334d09502d7c530 Author: cameronbracken Date: Sun Apr 4 12:40:34 2010 -0600 Minor edits to docs README | 7 +++++-- exec/pgfsweave-script.R | 2 +- man/pgfSweave.Rd | 12 +++++++++--- 3 files changed, 15 insertions(+), 6 deletions(-) commit 2223ef242be27cec4a250a79948861577ac10f52 Merge: c3461dd 94c62bf Author: cameronbracken Date: Sun Apr 4 12:34:07 2010 -0600 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit c3461dd65d21b3ec979c0464a97bbcecb7cc9e7a Author: cameronbracken Date: Sun Apr 4 12:32:38 2010 -0600 Fix Makevars for building on Solaris src/Makevars | 4 ---- 1 files changed, 0 insertions(+), 4 deletions(-) commit 94c62bfe979aface376e39fe336fe37599532deb Author: cameronbracken Date: Tue Feb 23 11:48:26 2010 -0700 Minor tweaks to NEWS, DESCRIPTION, README and vignette ChangeLog | 20 ++++++++++++++++++++ DESCRIPTION | 18 ++++++++++++------ NEWS | 13 ++++++++++--- README | 2 -- inst/doc/figs/fig-normalSweave.pdf | Bin 3140 -> 3071 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17594 -> 17644 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28974 -> 28919 bytes inst/doc/pgfSweave-example.pdf | Bin 88333 -> 88546 bytes inst/doc/pgfSweave.Rnw | 9 ++++----- inst/doc/pgfSweave.pdf | Bin 290255 -> 290456 bytes inst/misc/vignette-src/Makefile | 4 ++-- .../vignette-src/pgfSweave-vignette-source.Rnw | 5 ++--- 12 files changed, 50 insertions(+), 21 deletions(-) commit d970329d43165aab65424d1a16fda0c1030bd2f5 Author: cameronbracken Date: Tue Feb 23 01:57:06 2010 -0700 Check for correct pgf version on startup. Show correct filenames for examples in vignette. ChangeLog | 20 ++++++++ R/zzz.R | 49 ++++++++++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2929 -> 3140 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17330 -> 17594 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28698 -> 28974 bytes inst/doc/pgfSweave-example.pdf | Bin 88108 -> 88333 bytes inst/doc/pgfSweave.Rnw | 5 +- inst/doc/pgfSweave.pdf | Bin 289735 -> 290255 bytes inst/example/pgfSweave-example.tex | 44 ------------------ inst/misc/test-for-pgf.tex | 6 ++ inst/misc/vignette-src/Makefile | 4 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 6 ++- 12 files changed, 84 insertions(+), 50 deletions(-) commit 8b646513162b8486904ddbd916becc9d75602040 Author: cameronbracken Date: Fri Dec 25 12:32:28 2009 -0800 New release 1.0.3 for CRAN, see NEWS file ChangeLog | 250 +++++++++++++------- DESCRIPTION | 2 +- NEWS | 9 + README | 5 - exec/pgfsweave-script.R | 10 +- inst/doc/figs/fig-normalSweave.pdf | Bin 3048 -> 2929 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17299 -> 17330 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28663 -> 28698 bytes inst/doc/pgfSweave-example.pdf | Bin 86755 -> 88108 bytes inst/doc/pgfSweave.Rnw | 40 ++-- inst/doc/pgfSweave.pdf | Bin 277215 -> 289735 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 42 ++-- 12 files changed, 233 insertions(+), 125 deletions(-) commit 648d3068935afa77325696f95614ddf302903bff Author: cameronbracken Date: Sun Dec 6 01:59:47 2009 -0700 Better help for pgfsweave-script.R exec/install-script.R | 2 +- exec/pgfsweave | 4 +++- exec/pgfsweave-script.R | 26 ++++++++++++++------------ 3 files changed, 18 insertions(+), 14 deletions(-) commit 09fc61a37fe7fa5bc8d0e7dcd2b640fa130385cf Author: cameronbracken Date: Sat Dec 5 12:00:55 2009 -0700 Version number bump DESCRIPTION | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 0de2874ec1d0c493f0e8c90d17bc30fd8589ff00 Merge: 27f6b15 4158cb0 Author: cameronbracken Date: Sat Dec 5 11:59:08 2009 -0700 Merge branch 'master' of github.com:cameronbracken/pgfSweave commit 4158cb0cc3af3215dc65684067430e917bcfdf7c Author: cameronbracken Date: Sat Dec 5 11:54:51 2009 -0700 Fix bug where externalization did not work if pdf and eps were not explicitly set to FALSE. Thanks to Rasmus Pank for bringing this to my attention. R/pgfSweaveDriver.R | 8 ++++---- 1 files changed, 4 insertions(+), 4 deletions(-) commit 27f6b159e02fdc33bb28cb1a7b56d554613cf9ba Merge: 9cf2da9 07e5651 Author: cameronbracken Date: Sat Nov 28 12:50:09 2009 -0700 Merge branch 'master' of github.com:cameronbracken/pgfSweave Conflicts: src/Makevars commit 07e5651bd266d704c42df33dd08d3fe84e676414 Author: cameronbracken Date: Sat Nov 28 12:46:09 2009 -0700 Fixes for R_HOME warning on CRAN exec/install-script.R | 4 +++- man/pgfSweave.Rd | 2 ++ src/Makevars | 6 +++++- src/dummy.c | 5 ++++- 4 files changed, 14 insertions(+), 3 deletions(-) commit 9cf2da9a63801704daf5ff05eb17786d8f0eac45 Author: cameronbracken Date: Thu Nov 19 10:11:40 2009 -0700 Fix preper use of Rscript in Makevars DESCRIPTION | 2 +- src/Makevars | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) commit 06a5f407416d0cc0b6bf70709529850e77615bf2 Author: cameronbracken Date: Tue Nov 17 00:57:52 2009 -0700 Vignette recompile, treat pdf as binary ChangeLog | 33 +++++++++++++++++++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2929 -> 3048 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17336 -> 17299 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28664 -> 28663 bytes inst/doc/pgfSweave-example.pdf | Bin 86788 -> 86755 bytes inst/doc/pgfSweave.pdf | Bin 277172 -> 277215 bytes 6 files changed, 33 insertions(+), 0 deletions(-) commit 5f42a284cef2fed990b9298d66bbe842be4630e8 Author: cameronbracken Date: Tue Nov 17 00:44:07 2009 -0700 New install script for pgfsweave-script.R, which takes into account if windows is being used and acts accordingly Added dummy c file to avoid check warning exec/install-script.R | 55 +++++++++++++++++++++++++++++++++++++++++++++++++ src/Makevars | 14 +----------- src/Makevars.win | 22 ------------------- src/dummy.c | 5 ++++ 4 files changed, 61 insertions(+), 35 deletions(-) commit 1fdc9eaff9008e1cf894430621fe47cfea10bd8e Author: cameronbracken Date: Sat Nov 14 23:57:56 2009 -0700 Updates to NEWS and README, version ready for CRAN ChangeLog | 19 +++++++++++++++++++ DESCRIPTION | 2 +- NEWS | 22 ++++++++++++---------- README | 1 - exec/pgfsweave | 4 ++-- exec/pgfsweave-script.R | 2 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2984 -> 2929 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17297 -> 17336 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28732 -> 28664 bytes inst/doc/pgfSweave-example.pdf | Bin 86788 -> 86788 bytes inst/doc/pgfSweave.pdf | Bin 281600 -> 277172 bytes 11 files changed, 35 insertions(+), 15 deletions(-) commit b70267dfc9ff3baf9d2cb25e5af60b479eea63a9 Author: cameronbracken Date: Sat Nov 14 19:36:50 2009 -0700 Better support for R CMD pgfSweave on windows New git ChangeLog generated when compiling vignette ChangeLog | 1080 +++++++++++++++++++++++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 3047 -> 2984 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17340 -> 17297 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28617 -> 28732 bytes inst/doc/pgfSweave-example.pdf | Bin 88199 -> 86788 bytes inst/doc/pgfSweave.pdf | Bin 277175 -> 281600 bytes inst/misc/vignette-src/Makefile | 5 +- src/Makevars | 2 +- src/Makevars.win | 9 +- 9 files changed, 1092 insertions(+), 4 deletions(-) commit 5f7c27c851daad6be9095ec1ace99c4323f79fdf Author: cameronbracken Date: Tue Nov 10 00:23:58 2009 -0700 Makevars for windows, windows testing DESCRIPTION | 2 +- inst/doc/pgfSweave.pdf | Bin 292757 -> 277175 bytes man/pgfSweaveDriver.Rd | 2 +- src/Makevars.win | 17 +++++++++++++++++ 4 files changed, 19 insertions(+), 2 deletions(-) commit 7a9cdb55f2513aebb05e16b5482fc285bd41f480 Author: cameronbracken Date: Mon Nov 9 15:14:53 2009 -0700 Documentation update for 2.10.0 man/pgfSweave.Rd | 4 ++-- man/pgfSweaveDriver.Rd | 10 +++++----- 2 files changed, 7 insertions(+), 7 deletions(-) commit c0b3433bbd86a0cd3c1b63bff26310f114f3f0fa Author: cameronbracken Date: Mon Nov 9 14:20:10 2009 -0700 Merge in Charlie's edits Final tweaks for CRAN DESCRIPTION | 3 ++- R/pgfSweaveDriver.R | 2 +- README | 2 +- exec/pgfsweave-script.R | 9 +++++++-- inst/doc/figs/fig-normalSweave.pdf | Bin 2830 -> 3047 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17336 -> 17340 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28731 -> 28617 bytes inst/doc/pgfSweave-example.pdf | Bin 88515 -> 88199 bytes inst/doc/pgfSweave.Rnw | 5 +++++ inst/doc/pgfSweave.pdf | Bin 292235 -> 292757 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 11 ++++++++--- man/pgfSweave.Rd | 6 +++--- 12 files changed, 27 insertions(+), 11 deletions(-) commit 7c99b5cd328261cb3e49a1204011c367aa6a7c78 Merge: 1e58f80 be2fc52 Author: cameronbracken Date: Mon Nov 9 13:29:01 2009 -0700 Merge branch 'master' of git://github.com/Sharpie/pgfSweave commit 1e58f8036e1421cd6286f2348be016b868145096 Author: cameronbracken Date: Fri Oct 16 17:00:39 2009 -0600 Fixed bug with faulty change recognition by setting chunkChanged permenantly to FALSE R/pgfSweaveDriver.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit be2fc525151f79977de4a6c34aaddebe0face8da Author: Charlie Sharpsteen Date: Thu Oct 15 00:15:13 2009 -0700 - Many edits and spell fixes in the vignette. inst/doc/pgfSweave.Rnw | 49 ++++++++++------- inst/doc/pgfSweave.pdf | Bin 291206 -> 292235 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 57 ++++++++++++-------- 3 files changed, 64 insertions(+), 42 deletions(-) commit 1aaa05a6a2c51e4785fcbc4eb48432d2decdd920 Author: cameronbracken Date: Fri Sep 25 12:33:30 2009 -0600 updating Rd files man/pgfSweave.Rd | 13 ++++++++----- man/pgfSweaveDriver.Rd | 14 +++++++++----- 2 files changed, 17 insertions(+), 10 deletions(-) commit 9d7c558190af1ec78608e38381d339c3581bfc55 Author: cameronbracken Date: Fri Sep 25 12:12:00 2009 -0600 Removing old vignette files, updated Makefile inst/doc/figs/fig-normalSweave.pdf | Bin 3102 -> 2830 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 17391 -> 17336 bytes inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 0 -> 28731 bytes inst/doc/pgfSweave-example-Rnw.in | 3 +- inst/doc/pgfSweave-example-tex.in | 3 +- inst/doc/pgfSweave-example.pdf | Bin 88429 -> 88515 bytes inst/doc/pgfSweave.Rnw | 186 +++++++++----------- inst/doc/pgfSweave.pdf | Bin 270033 -> 291206 bytes inst/doc/pgfSweave.pgf | Bin 177839 -> 0 bytes inst/doc/third.R | 6 - inst/doc/wave.R | 14 -- inst/example/pgfSweave-example.tex | 3 +- inst/misc/vignette-src/Makefile | 9 - .../vignette-src/pgfSweave-vignette-source.Rnw | 6 +- inst/misc/vignette-src/third.R | 6 - inst/misc/vignette-src/wave.R | 14 -- 16 files changed, 96 insertions(+), 154 deletions(-) commit b473ad1b41ed6360e4c0eca0e3bd048fc58e1b9e Merge: fdb4735 7094067 Author: cameronbracken Date: Fri Sep 25 11:59:54 2009 -0600 Merge branch 'tikz-device' Conflicts: R/zzz.R commit 7094067923f809270cee75565aab1e4c18fe1a76 Author: cameronbracken Date: Fri Sep 25 11:58:19 2009 -0600 More work on vignette exec/pgfsweave | 2 + inst/example/pgfSweave-example.Rnw | 3 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 116 ++++++++++++-------- 3 files changed, 73 insertions(+), 48 deletions(-) commit 683105a0323fefc32afe7a7426cd87098e1928d2 Author: cameronbracken Date: Tue Sep 22 00:10:02 2009 -0600 Updated NEWS NEWS | 5 ++++- 1 files changed, 4 insertions(+), 1 deletions(-) commit 029f10780862f22a49f6f0485711340cacd1f984 Author: cameronbracken Date: Tue Sep 22 00:05:25 2009 -0600 Major Update to vignette, Pushed version number to 1.0 in anticipation of CRAN, many other small fixes and changes DESCRIPTION | 8 +- NAMESPACE | 1 - NEWS | 5 + R/cacheSweaveUnexportedFunctions.R | 10 +- R/pgfSweaveDriver.R | 4 +- exec/pgfsweave-script.R | 4 +- inst/doc/figs/fig-fancy.pdf | Bin 17355 -> 0 bytes inst/doc/figs/fig-normalSweave.pdf | Bin 2987 -> 3102 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 10710 -> 17391 bytes inst/doc/figs/fig-third.pdf | Bin 54588 -> 0 bytes inst/doc/pgfSweave-example-Rnw.in | 2 +- inst/doc/pgfSweave-example-tex.in | 2 +- inst/doc/pgfSweave-example.pdf | Bin 39833 -> 88429 bytes inst/doc/pgfSweave.Rnw | 201 ++++++++++++-------- inst/doc/pgfSweave.pdf | Bin 216267 -> 270033 bytes inst/example/pgfSweave-example.Rnw | 2 +- inst/example/pgfSweave-example.tex | 2 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 196 ++++++++++++++------ 18 files changed, 289 insertions(+), 148 deletions(-) commit fdb473565ec156923f8b51769f4689c57bf8ca1c Merge: b4fe93d ac1eb2f Author: Cameron Bracken Date: Tue Jun 23 07:55:44 2009 -0600 Merge branch 'cmd-script' commit ac1eb2fdf3b38b84e9bac41d25da8a2fa4151a57 Author: Cameron Bracken Date: Tue Jun 23 07:54:56 2009 -0600 another dummy commit README | 7 ++++++- 1 files changed, 6 insertions(+), 1 deletions(-) commit 7c9f6c5d0f5ef7b3140300334567f0e977f94b1c Author: Cameron Bracken Date: Tue Jun 23 07:53:53 2009 -0600 dummy commit NEWS | 1 + 1 files changed, 1 insertions(+), 0 deletions(-) commit b4fe93d2412b163ae33e539787ea0d21b1b44699 Author: Cameron Bracken Date: Tue Jun 23 00:20:52 2009 -0600 Updated NEWS and README files NEWS | 10 ++++++++++ R/zzz.R | 2 +- README | 21 +++++++++++++-------- 3 files changed, 24 insertions(+), 9 deletions(-) commit 67b41b59470b8d004541d091c2762fc401c7c97d Merge: aa9080f 4ef0dbe Author: Cameron Bracken Date: Tue Jun 23 00:00:15 2009 -0600 Merge branch 'master' of git@github.com:cameronbracken/pgfSweave into tikz-device Conflicts: ChangeLog inst/misc/vignette-src/pgfSweave-vignette-source.Rnw commit 4ef0dbe31bc0d3755439ffd4a6507f707f1c4b2f Author: Cameron Bracken Date: Mon Jun 22 23:46:36 2009 -0600 Now pgfsweave script is installed by default via src/Makevars configure.ac | 15 - exec/pgfsweave-script.R | 16 +- inst/example/Makefile | 2 +- inst/misc/svn2cl-0.11/ChangeLog | 550 -------------------- inst/misc/svn2cl-0.11/NEWS | 103 ---- inst/misc/svn2cl-0.11/README | 102 ---- inst/misc/svn2cl-0.11/TODO | 10 - inst/misc/svn2cl-0.11/authors.xml | 12 - inst/misc/svn2cl-0.11/svn2cl.1 | 208 -------- inst/misc/svn2cl-0.11/svn2cl.sh | 334 ------------ inst/misc/svn2cl-0.11/svn2cl.xsl | 496 ------------------ inst/misc/svn2cl-0.11/svn2html.css | 79 --- inst/misc/svn2cl-0.11/svn2html.xsl | 208 -------- .../vignette-src/pgfSweave-vignette-source.Rnw | 4 +- src/Makevars | 15 +- src/Makevars.in | 7 - 16 files changed, 29 insertions(+), 2132 deletions(-) commit 9c282851b018db18d675cc544402c941ced7a2a4 Author: Cameron Bracken Date: Mon Jun 22 22:12:12 2009 -0600 Testing charlie's method for installing a custom R CMD script ChangeLog | 395 ------------------------------------------------------- DESCRIPTION | 2 +- README | 151 +++++++++++++++------- configure.ac | 15 ++ src/Makevars | 7 + src/Makevars.in | 7 + 6 files changed, 136 insertions(+), 441 deletions(-) commit aa9080f75e27cb4cdbd9c3eaf9ca9992e73d4a74 Author: Cameron Bracken Date: Mon Jun 22 17:25:32 2009 -0600 Added tikz option experimentally ChangeLog | 395 -------------------- DESCRIPTION | 2 +- R/pgfSweaveDriver.R | 38 ++- R/zzz.R | 2 +- inst/doc/figs/fig-fancy.pdf | Bin 17178 -> 17355 bytes inst/doc/figs/fig-normalSweave.pdf | Bin 2752 -> 2987 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9863 -> 10710 bytes inst/doc/figs/fig-third.pdf | Bin 53699 -> 54588 bytes inst/doc/pgfSweave-example-Rnw.in | 8 +- inst/doc/pgfSweave-example-tex.in | 6 +- inst/doc/pgfSweave-example.pdf | Bin 39616 -> 39833 bytes inst/doc/pgfSweave.Rnw | 10 +- inst/doc/pgfSweave.pdf | Bin 211907 -> 216267 bytes inst/example/pgfSweave-example.Rnw | 8 +- inst/example/pgfSweave-example.tex | 6 +- inst/misc/vignette-src/Makefile | 4 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 16 +- 17 files changed, 61 insertions(+), 434 deletions(-) commit e41f9782805e88d3403203f385096f69fe63256c Author: Cameron Bracken Date: Mon Jun 22 16:39:56 2009 -0600 More flexable make file for vignette inst/doc/figs/fig-fancy.pdf | Bin 17174 -> 17178 bytes inst/doc/figs/fig-normalSweave.pdf | Bin 3011 -> 2752 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 10207 -> 9863 bytes inst/doc/figs/fig-third.pdf | Bin 53550 -> 53699 bytes inst/doc/pgfSweave-example.pdf | Bin 39924 -> 39616 bytes inst/doc/pgfSweave.pdf | Bin 215225 -> 211907 bytes inst/misc/vignette-src/Makefile | 77 +++++++++++++++++++++------------- 7 files changed, 48 insertions(+), 29 deletions(-) commit d56a9cb3507f192cd3b62c32dc35ba45a3a81573 Author: Cameron Bracken Date: Thu Jun 18 19:58:07 2009 +0000 Using the highlight package for fancy code in the vignette ChangeLog | 23 ++++ inst/doc/figs/fig-fancy.pdf | Bin 18374 -> 17174 bytes inst/doc/figs/fig-normalSweave.pdf | Bin 2881 -> 3011 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9239 -> 10207 bytes inst/doc/figs/fig-third.pdf | Bin 66848 -> 53550 bytes inst/doc/pgfSweave-example.pdf | Bin 39891 -> 39924 bytes inst/doc/pgfSweave.Rnw | 121 ++++++++++++++------ inst/doc/pgfSweave.pdf | Bin 218012 -> 215225 bytes inst/doc/third.R | 6 + inst/doc/wave.R | 14 +++ inst/misc/vignette-src/Makefile | 2 + .../vignette-src/pgfSweave-vignette-source.Rnw | 82 ++++++-------- inst/misc/vignette-src/third.R | 6 + inst/misc/vignette-src/wave.R | 14 +++ 14 files changed, 187 insertions(+), 81 deletions(-) commit 4a44e123ee3a713813b727f37e85f21b1bbeb718 Author: Cameron Bracken Date: Fri May 1 16:08:10 2009 +0000 - Encoding issue wit DESCRITION file - New example in vignette DESCRIPTION | 2 +- NEWS | 35 ++++++++++----- inst/doc/figs/fig-fancy.pdf | Bin 0 -> 18374 bytes inst/doc/figs/fig-normalSweave.pdf | Bin 2955 -> 2881 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9566 -> 9239 bytes inst/doc/figs/fig-third.pdf | Bin 67130 -> 66848 bytes inst/doc/pgfSweave-example.pdf | Bin 40091 -> 39891 bytes inst/doc/pgfSweave.Rnw | 35 +++++++++++++- inst/doc/pgfSweave.pdf | Bin 205637 -> 218012 bytes inst/misc/vignette-src/Makefile | 2 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 47 ++++++++++++++++++- 11 files changed, 102 insertions(+), 19 deletions(-) commit 02a7a4cf055d0ac8bc56aa7acf6e3f482326c324 Author: Cameron Bracken Date: Fri May 1 06:00:59 2009 +0000 - Updated packages description files ChangeLog | 21 +++++++++++++++++++++ DESCRIPTION | 8 ++++---- NEWS | 5 +++++ README | 2 +- 4 files changed, 31 insertions(+), 5 deletions(-) commit b7fac1e85c387aad6df55582b96f87a938496fea Author: Cameron Bracken Date: Fri May 1 05:40:40 2009 +0000 - pgfSweave now turns off kerning if R.Version >= 2.9.0 because strange line breakes occur in conversion to pgf and then to pdf. R/pgfSweaveDriver.R | 150 ++++++++++++++++++++++++++++++++++--------------- inst/example/Makefile | 2 +- 2 files changed, 105 insertions(+), 47 deletions(-) commit af0cdee32c85c1ee5dc0e2b845e9d838bf84120c Author: Cameron Bracken Date: Thu Apr 30 07:06:55 2009 +0000 - New R version of shell script exec/pgfsweave | 76 +++++++++++++++++++++++++++++++++++++++++++++++ exec/pgfsweave-script.R | 74 +++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 150 insertions(+), 0 deletions(-) commit 0a51f8af2f50fef2e5e7fefa4034a0ed9c0925ea Author: Cameron Bracken Date: Thu Apr 30 06:50:40 2009 +0000 - renaming shell script exec/pgfSweave | 76 -------------------------------------------------------- 1 files changed, 0 insertions(+), 76 deletions(-) commit 2301df16251405d1e0c9c4951ad9fe9901b6cf34 Author: Cameron Bracken Date: Wed Apr 29 02:25:56 2009 +0000 - Added shell script option --graphics-only ChangeLog | 19 +++++++++ exec/pgfSweave | 40 ++++++++++++++++---- inst/doc/figs/fig-normalSweave.pdf | Bin 3041 -> 2955 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9621 -> 9566 bytes inst/doc/figs/fig-third.pdf | Bin 67622 -> 67130 bytes inst/doc/pgfSweave-example-Rnw.in | 5 ++ inst/doc/pgfSweave-example-tex.in | 6 ++- inst/doc/pgfSweave-example.pdf | Bin 40210 -> 40091 bytes inst/doc/pgfSweave.Rnw | 10 ++++- inst/doc/pgfSweave.pdf | Bin 204224 -> 205637 bytes inst/example/pgfSweave-example.Rnw | 5 ++ inst/example/pgfSweave-example.tex | 6 ++- .../vignette-src/pgfSweave-vignette-source.Rnw | 10 ++++- 13 files changed, 89 insertions(+), 12 deletions(-) commit 3aa4983986e87ad8d1b6d521dff144cdc9471dfb Author: Cameron Bracken Date: Sun Apr 19 01:54:39 2009 +0000 - Added a GNU ChangeLog genterated with the svn2cl utility - The ChangeLog is generated when make is ran in the inst/misc/vignette-src directory ChangeLog | 332 ++++++++++++++++++++ DESCRIPTION | 1 + inst/doc/figs/fig-normalSweave.pdf | Bin 2987 -> 3041 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9580 -> 9621 bytes inst/doc/figs/fig-third.pdf | Bin 68121 -> 67622 bytes inst/doc/pgfSweave-example-tex.in | 2 +- inst/doc/pgfSweave-example.pdf | Bin 39853 -> 40210 bytes inst/doc/pgfSweave.pdf | Bin 204928 -> 204224 bytes inst/example/pgfSweave-example.tex | 23 +- inst/misc/svn2cl-0.11/ChangeLog | 550 ++++++++++++++++++++++++++++++++++ inst/misc/svn2cl-0.11/NEWS | 103 +++++++ inst/misc/svn2cl-0.11/README | 102 +++++++ inst/misc/svn2cl-0.11/TODO | 10 + inst/misc/svn2cl-0.11/authors.xml | 12 + inst/misc/svn2cl-0.11/svn2cl.1 | 208 +++++++++++++ inst/misc/svn2cl-0.11/svn2cl.sh | 334 +++++++++++++++++++++ inst/misc/svn2cl-0.11/svn2cl.xsl | 496 ++++++++++++++++++++++++++++++ inst/misc/svn2cl-0.11/svn2html.css | 79 +++++ inst/misc/svn2cl-0.11/svn2html.xsl | 208 +++++++++++++ inst/misc/vignette-src/Makefile | 30 ++- 20 files changed, 2475 insertions(+), 15 deletions(-) commit fddc4607974cf01723f2d86beb699a4a154671a1 Author: Cameron Bracken Date: Mon Apr 13 23:44:37 2009 +0000 - webpage update - updated todo list in README DESCRIPTION | 6 +++--- README | 9 +++++++-- man/pgfSweave.Rd | 6 +++--- 3 files changed, 13 insertions(+), 8 deletions(-) commit b7fbd978939f658461a8e64580e46f14e5741418 Author: Cameron Bracken Date: Tue Mar 24 23:22:52 2009 +0000 - missing image file for vignette inst/doc/pgfSweave-example.pdf | Bin 0 -> 39853 bytes 1 files changed, 0 insertions(+), 0 deletions(-) commit 065676b824ac914580677026f732c5706ab3edf6 Author: Cameron Bracken Date: Tue Mar 24 23:20:39 2009 +0000 - More windows fixes - Improved example inst/doc/figs/fig-normalSweave.pdf | Bin 3102 -> 2987 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9616 -> 9580 bytes inst/doc/figs/fig-third.pdf | Bin 67630 -> 68121 bytes inst/doc/pgfSweave-example-Rnw.in | 22 +++++++++++++------ inst/doc/pgfSweave-example-tex.in | 21 ++++++++++++------ inst/doc/pgfSweave.Rnw | 10 ++++++-- inst/doc/pgfSweave.pdf | Bin 188931 -> 204928 bytes inst/example/Makefile | 8 +++--- inst/example/pgfSweave-example.Rnw | 22 +++++++++++++------ inst/misc/vignette-src/Makefile | 19 +++++++++++----- .../vignette-src/pgfSweave-vignette-source.Rnw | 12 +++++++--- 11 files changed, 76 insertions(+), 38 deletions(-) commit 08bf8e44da4ac763d1143bf8a1aea214fce5abbc Author: Cameron Bracken Date: Tue Mar 24 21:46:23 2009 +0000 - windows specific tweaks R/pgfSweave.R | 23 ++++++++++++----------- exec/pgfSweave | 4 ++-- 2 files changed, 14 insertions(+), 13 deletions(-) commit 8adaf2cc9018bc9ccbb23b0d66f8e9d389dd63cc Author: Cameron Bracken Date: Tue Mar 24 05:05:30 2009 +0000 - minor fix to check if we are running under windows correctly R/pgfSweave.R | 6 ++++-- 1 files changed, 4 insertions(+), 2 deletions(-) commit 1275cba8d0de64c46ecafbbdf4a9b049eaa93055 Author: Cameron Bracken Date: Sun Mar 22 12:19:00 2009 +0000 - Added support for miktex -job-name command line option - Vignette update with windows installation instructions R/pgfSweave.R | 7 +- README | 18 ++- exec/pgfSweave | 4 +- inst/doc/Sweave.sty | 6 + inst/doc/figs/fig-normalSweave.pdf | Bin 3042 -> 3102 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9593 -> 9616 bytes inst/doc/figs/fig-third.pdf | Bin 66458 -> 67630 bytes inst/doc/pgfSweave.Rnw | 141 +++++++++++++++----- inst/doc/pgfSweave.pdf | Bin 181088 -> 188931 bytes inst/misc/vignette-src/Makefile | 3 +- inst/misc/vignette-src/Sweave.sty | 6 + .../vignette-src/pgfSweave-vignette-source.Rnw | 141 +++++++++++++++----- 12 files changed, 242 insertions(+), 84 deletions(-) commit e0dbf47b6958eca0fd37adc4206186334b97bb3a Author: Cameron Bracken Date: Wed Mar 11 02:15:32 2009 +0000 - custom web page man/pgfSweave.Rd | 1 + man/pgfSweaveDriver.Rd | 5 +++-- 2 files changed, 4 insertions(+), 2 deletions(-) commit 8cd88b7374f4a9db3c68439c87215272a1bde1ac Author: Cameron Bracken Date: Tue Mar 10 07:08:04 2009 +0000 - pdf version of vignette inst/doc/pgfSweave.pdf | Bin 0 -> 181088 bytes 1 files changed, 0 insertions(+), 0 deletions(-) commit d41344e76043222a6b4cdcd48321b46d41b34a59 Author: Cameron Bracken Date: Tue Mar 10 06:58:56 2009 +0000 - updated more robust example that actually compiles - fix to pgfSweave.R to handle file names with absolute paths - small documentation changes R/pgfSweave.R | 9 +++-- inst/doc/figs/fig-normalSweave.pdf | Bin 3010 -> 3042 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9595 -> 9593 bytes inst/doc/figs/fig-third.pdf | Bin 67658 -> 66458 bytes inst/doc/pgfSweave-example-Rnw.in | 10 +++-- inst/doc/pgfSweave-example-tex.in | 8 +++-- inst/example/pgfSweave-example.Rnw | 10 +++-- inst/example/pgfSweave-example.tex | 8 +++-- man/pgfSweave.Rd | 60 +++++++++++++++++++++------------- man/pgfSweaveDriver.Rd | 30 ++++++++++++----- 10 files changed, 86 insertions(+), 49 deletions(-) commit f08171f40c0b17c228aa8dc257db4074f8e160cc Author: Cameron Bracken Date: Tue Feb 24 07:54:08 2009 +0000 -making sure vignette is up to date inst/doc/figs/fig-normalSweave.pdf | Bin 3011 -> 3010 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9591 -> 9595 bytes inst/doc/figs/fig-third.pdf | Bin 67520 -> 67658 bytes inst/doc/pgfSweave.Rnw | 4 ++-- 4 files changed, 2 insertions(+), 2 deletions(-) commit 7866486adc39174b6f6a0b272ffbcd5e44e0ffb0 Author: Cameron Bracken Date: Fri Feb 20 06:04:49 2009 +0000 -renaming vignette inst/doc/pgfSweave-vignette.Rnw | 229 -------------------------------------- inst/doc/pgfSweave-vignette.pdf | Bin 177839 -> 0 bytes inst/doc/pgfSweave.Rnw | 231 +++++++++++++++++++++++++++++++++++++++ inst/doc/pgfSweave.pgf | Bin 0 -> 177839 bytes 4 files changed, 231 insertions(+), 229 deletions(-) commit ca481f1919521900c3dc3225059c893b9195591b Author: Cameron Bracken Date: Fri Feb 20 05:53:59 2009 +0000 -small update to vignette -tagged version 0.6, trunk version is 0.7 DESCRIPTION | 4 ++-- NEWS | 14 +++++++++++++- README | 13 +++++++------ inst/doc/figs/fig-normalSweave.pdf | Bin 3014 -> 3011 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9582 -> 9591 bytes inst/doc/figs/fig-third.pdf | Bin 67445 -> 67520 bytes inst/misc/vignette-src/Makefile | 10 +++++----- .../vignette-src/pgfSweave-vignette-source.Rnw | 12 +++++++----- 8 files changed, 34 insertions(+), 19 deletions(-) commit 452295c439f75aa1cfc76710975a1f5df2220b00 Author: Cameron Bracken Date: Sat Feb 7 00:20:22 2009 +0000 no message inst/doc/figs/fig-normalSweave.pdf | Bin 3015 -> 3014 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9589 -> 9582 bytes inst/doc/figs/fig-third.pdf | Bin 68110 -> 67445 bytes inst/doc/pgfSweave-vignette.pdf | Bin 178388 -> 177839 bytes 4 files changed, 0 insertions(+), 0 deletions(-) commit 2f59860dad2464239a8378a5a187b7bf7740fb82 Author: Cameron Bracken Date: Fri Feb 6 06:34:59 2009 +0000 -fixed a commiting blunder exec/DESCRIPTION | 12 - exec/NAMESPACE | 7 - exec/NEWS | 4 - exec/README | 50 - exec/exec/pgfSweave | 52 - exec/inst/COPYING | 17 - exec/inst/doc/Sweave.sty | 27 - exec/inst/doc/figs/fig-normalSweave.pdf | Bin 3015 -> 0 bytes exec/inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9589 -> 0 bytes exec/inst/doc/figs/fig-third.pdf | Bin 68110 -> 0 bytes exec/inst/doc/pgfSweave-example-Rnw.in | 30 - exec/inst/doc/pgfSweave-example-tex.in | 30 - exec/inst/doc/pgfSweave-vignette.Rnw | 229 -- exec/inst/doc/pgfSweave-vignette.pdf | Bin 178388 -> 0 bytes exec/inst/example/Makefile | 6 - exec/inst/example/pgfSweave-example.Rnw | 30 - exec/inst/example/pgfSweave-example.tex | 30 - exec/inst/java/eps2pgf/LICENSE.txt | 201 -- exec/inst/java/eps2pgf/NOTICE.txt | 63 - exec/inst/java/eps2pgf/README.txt | 110 - exec/inst/java/eps2pgf/doc/eps2pgf_manual.pdf | Bin 112401 -> 0 bytes exec/inst/java/eps2pgf/eps2pgf.jar | Bin 165159 -> 0 bytes exec/inst/java/eps2pgf/lib/FontBox-0.1.0.jar | Bin 63167 -> 0 bytes exec/inst/java/eps2pgf/lib/JSAP-2.1.jar | Bin 69344 -> 0 bytes exec/inst/java/eps2pgf/lib/LICENSE_FontBox.txt | 25 - exec/inst/java/eps2pgf/lib/LICENSE_JSAP.txt | 31 - .../java/eps2pgf/resources/afm/Courier-Bold.afm | 342 --- .../eps2pgf/resources/afm/Courier-BoldOblique.afm | 342 --- .../java/eps2pgf/resources/afm/Courier-Oblique.afm | 342 --- exec/inst/java/eps2pgf/resources/afm/Courier.afm | 342 --- .../java/eps2pgf/resources/afm/Helvetica-Bold.afm | 2827 ------------------ .../resources/afm/Helvetica-BoldOblique.afm | 2827 ------------------ .../eps2pgf/resources/afm/Helvetica-Oblique.afm | 3051 -------------------- exec/inst/java/eps2pgf/resources/afm/Helvetica.afm | 3051 -------------------- exec/inst/java/eps2pgf/resources/afm/MustRead.html | 1 - exec/inst/java/eps2pgf/resources/afm/Symbol.afm | 213 -- .../inst/java/eps2pgf/resources/afm/Times-Bold.afm | 2588 ----------------- .../eps2pgf/resources/afm/Times-BoldItalic.afm | 2384 --------------- .../java/eps2pgf/resources/afm/Times-Italic.afm | 2667 ----------------- .../java/eps2pgf/resources/afm/Times-Roman.afm | 2419 ---------------- .../java/eps2pgf/resources/afm/ZapfDingbats.afm | 225 -- .../java/eps2pgf/resources/fontSubstitution.xml | 10 - .../resources/fontdescriptions/Courier-Bold.font | 9 - .../fontdescriptions/Courier-BoldOblique.font | 9 - .../fontdescriptions/Courier-Oblique.font | 9 - .../resources/fontdescriptions/Courier.font | 9 - .../resources/fontdescriptions/Helvetica-Bold.font | 9 - .../fontdescriptions/Helvetica-BoldOblique.font | 9 - .../fontdescriptions/Helvetica-Oblique.font | 9 - .../resources/fontdescriptions/Helvetica.font | 9 - .../eps2pgf/resources/fontdescriptions/Symbol.font | 9 - .../resources/fontdescriptions/Times-Bold.font | 9 - .../fontdescriptions/Times-BoldItalic.font | 9 - .../resources/fontdescriptions/Times-Italic.font | 9 - .../resources/fontdescriptions/Times-Roman.font | 9 - .../resources/fontdescriptions/ZapfDingbats.font | 9 - .../java/eps2pgf/resources/texstrings/default.xml | 405 --- .../eps2pgf/resources/texstrings/mathematica.xml | 504 ---- exec/inst/misc/vignette-src/Makefile | 40 - exec/inst/misc/vignette-src/Sweave.sty | 27 - .../vignette-src/pgfSweave-vignette-source.Rnw | 225 -- 61 files changed, 0 insertions(+), 25912 deletions(-) commit 43aeb09391bf92189f16464e326a189c1396e100 Author: Cameron Bracken Date: Fri Feb 6 06:14:22 2009 +0000 -Initial commit -Added branches and tags exec/DESCRIPTION | 12 + exec/NAMESPACE | 7 + exec/NEWS | 4 + exec/README | 50 + exec/exec/pgfSweave | 52 + exec/inst/COPYING | 17 + exec/inst/doc/Sweave.sty | 27 + exec/inst/doc/figs/fig-normalSweave.pdf | Bin 0 -> 3015 bytes exec/inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 0 -> 9589 bytes exec/inst/doc/figs/fig-third.pdf | Bin 0 -> 68110 bytes exec/inst/doc/pgfSweave-example-Rnw.in | 30 + exec/inst/doc/pgfSweave-example-tex.in | 30 + exec/inst/doc/pgfSweave-vignette.Rnw | 229 ++ exec/inst/doc/pgfSweave-vignette.pdf | Bin 0 -> 178388 bytes exec/inst/example/Makefile | 6 + exec/inst/example/pgfSweave-example.Rnw | 30 + exec/inst/example/pgfSweave-example.tex | 30 + exec/inst/java/eps2pgf/LICENSE.txt | 201 ++ exec/inst/java/eps2pgf/NOTICE.txt | 63 + exec/inst/java/eps2pgf/README.txt | 110 + exec/inst/java/eps2pgf/doc/eps2pgf_manual.pdf | Bin 0 -> 112401 bytes exec/inst/java/eps2pgf/eps2pgf.jar | Bin 0 -> 165159 bytes exec/inst/java/eps2pgf/lib/FontBox-0.1.0.jar | Bin 0 -> 63167 bytes exec/inst/java/eps2pgf/lib/JSAP-2.1.jar | Bin 0 -> 69344 bytes exec/inst/java/eps2pgf/lib/LICENSE_FontBox.txt | 25 + exec/inst/java/eps2pgf/lib/LICENSE_JSAP.txt | 31 + .../java/eps2pgf/resources/afm/Courier-Bold.afm | 342 +++ .../eps2pgf/resources/afm/Courier-BoldOblique.afm | 342 +++ .../java/eps2pgf/resources/afm/Courier-Oblique.afm | 342 +++ exec/inst/java/eps2pgf/resources/afm/Courier.afm | 342 +++ .../java/eps2pgf/resources/afm/Helvetica-Bold.afm | 2827 ++++++++++++++++++ .../resources/afm/Helvetica-BoldOblique.afm | 2827 ++++++++++++++++++ .../eps2pgf/resources/afm/Helvetica-Oblique.afm | 3051 ++++++++++++++++++++ exec/inst/java/eps2pgf/resources/afm/Helvetica.afm | 3051 ++++++++++++++++++++ exec/inst/java/eps2pgf/resources/afm/MustRead.html | 1 + exec/inst/java/eps2pgf/resources/afm/Symbol.afm | 213 ++ .../inst/java/eps2pgf/resources/afm/Times-Bold.afm | 2588 +++++++++++++++++ .../eps2pgf/resources/afm/Times-BoldItalic.afm | 2384 +++++++++++++++ .../java/eps2pgf/resources/afm/Times-Italic.afm | 2667 +++++++++++++++++ .../java/eps2pgf/resources/afm/Times-Roman.afm | 2419 ++++++++++++++++ .../java/eps2pgf/resources/afm/ZapfDingbats.afm | 225 ++ .../java/eps2pgf/resources/fontSubstitution.xml | 10 + .../resources/fontdescriptions/Courier-Bold.font | 9 + .../fontdescriptions/Courier-BoldOblique.font | 9 + .../fontdescriptions/Courier-Oblique.font | 9 + .../resources/fontdescriptions/Courier.font | 9 + .../resources/fontdescriptions/Helvetica-Bold.font | 9 + .../fontdescriptions/Helvetica-BoldOblique.font | 9 + .../fontdescriptions/Helvetica-Oblique.font | 9 + .../resources/fontdescriptions/Helvetica.font | 9 + .../eps2pgf/resources/fontdescriptions/Symbol.font | 9 + .../resources/fontdescriptions/Times-Bold.font | 9 + .../fontdescriptions/Times-BoldItalic.font | 9 + .../resources/fontdescriptions/Times-Italic.font | 9 + .../resources/fontdescriptions/Times-Roman.font | 9 + .../resources/fontdescriptions/ZapfDingbats.font | 9 + .../java/eps2pgf/resources/texstrings/default.xml | 405 +++ .../eps2pgf/resources/texstrings/mathematica.xml | 504 ++++ exec/inst/misc/vignette-src/Makefile | 40 + exec/inst/misc/vignette-src/Sweave.sty | 27 + .../vignette-src/pgfSweave-vignette-source.Rnw | 225 ++ 61 files changed, 25912 insertions(+), 0 deletions(-) commit 43a0c83a5c7424a403e4b1624d4007123b5ec159 Author: Cameron Bracken Date: Fri Feb 6 04:24:36 2009 +0000 fixed check erroe R/zzz.R | 1 - 1 files changed, 0 insertions(+), 1 deletions(-) commit ea8e52804b1215311510c424c98b9fc510e67f9d Author: Cameron Bracken Date: Fri Feb 6 04:20:25 2009 +0000 removed rJava from zzz.R, my bad R/zzz.R | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 3a863db89bf14788e7a092cbb40d2a68421f9fad Author: Cameron Bracken Date: Tue Jan 27 08:45:26 2009 +0000 Fixed -s option to pgfSweave shell script exec/pgfSweave | 1 + 1 files changed, 1 insertions(+), 0 deletions(-) commit 934a38fdfe07572ef9234a5f3eec46436b64a578 Author: Cameron Bracken Date: Mon Jan 26 22:02:26 2009 +0000 - moved eps2pgf to the java directory - updated pgfSweaveDriver.R to reflect the changed path - minor documentation updates R/pgfSweaveDriver.R | 2 +- R/zzz.R | 3 +- README | 7 +- inst/doc/figs/fig-normalSweave.pdf | Bin 2914 -> 3015 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9201 -> 9589 bytes inst/doc/figs/fig-third.pdf | Bin 67476 -> 68110 bytes inst/doc/pgfSweave-vignette.pdf | Bin 177227 -> 178388 bytes inst/java/eps2pgf/LICENSE.txt | 201 ++ inst/java/eps2pgf/NOTICE.txt | 63 + inst/java/eps2pgf/README.txt | 110 + inst/java/eps2pgf/doc/eps2pgf_manual.pdf | Bin 0 -> 112401 bytes inst/java/eps2pgf/eps2pgf.jar | Bin 0 -> 165159 bytes inst/java/eps2pgf/lib/FontBox-0.1.0.jar | Bin 0 -> 63167 bytes inst/java/eps2pgf/lib/JSAP-2.1.jar | Bin 0 -> 69344 bytes inst/java/eps2pgf/lib/LICENSE_FontBox.txt | 25 + inst/java/eps2pgf/lib/LICENSE_JSAP.txt | 31 + inst/java/eps2pgf/resources/afm/Courier-Bold.afm | 342 +++ .../eps2pgf/resources/afm/Courier-BoldOblique.afm | 342 +++ .../java/eps2pgf/resources/afm/Courier-Oblique.afm | 342 +++ inst/java/eps2pgf/resources/afm/Courier.afm | 342 +++ inst/java/eps2pgf/resources/afm/Helvetica-Bold.afm | 2827 ++++++++++++++++++ .../resources/afm/Helvetica-BoldOblique.afm | 2827 ++++++++++++++++++ .../eps2pgf/resources/afm/Helvetica-Oblique.afm | 3051 ++++++++++++++++++++ inst/java/eps2pgf/resources/afm/Helvetica.afm | 3051 ++++++++++++++++++++ inst/java/eps2pgf/resources/afm/MustRead.html | 1 + inst/java/eps2pgf/resources/afm/Symbol.afm | 213 ++ inst/java/eps2pgf/resources/afm/Times-Bold.afm | 2588 +++++++++++++++++ .../eps2pgf/resources/afm/Times-BoldItalic.afm | 2384 +++++++++++++++ inst/java/eps2pgf/resources/afm/Times-Italic.afm | 2667 +++++++++++++++++ inst/java/eps2pgf/resources/afm/Times-Roman.afm | 2419 ++++++++++++++++ inst/java/eps2pgf/resources/afm/ZapfDingbats.afm | 225 ++ inst/java/eps2pgf/resources/fontSubstitution.xml | 10 + .../resources/fontdescriptions/Courier-Bold.font | 9 + .../fontdescriptions/Courier-BoldOblique.font | 9 + .../fontdescriptions/Courier-Oblique.font | 9 + .../resources/fontdescriptions/Courier.font | 9 + .../resources/fontdescriptions/Helvetica-Bold.font | 9 + .../fontdescriptions/Helvetica-BoldOblique.font | 9 + .../fontdescriptions/Helvetica-Oblique.font | 9 + .../resources/fontdescriptions/Helvetica.font | 9 + .../eps2pgf/resources/fontdescriptions/Symbol.font | 9 + .../resources/fontdescriptions/Times-Bold.font | 9 + .../fontdescriptions/Times-BoldItalic.font | 9 + .../resources/fontdescriptions/Times-Italic.font | 9 + .../resources/fontdescriptions/Times-Roman.font | 9 + .../resources/fontdescriptions/ZapfDingbats.font | 9 + inst/java/eps2pgf/resources/texstrings/default.xml | 405 +++ .../eps2pgf/resources/texstrings/mathematica.xml | 504 ++++ inst/misc/eps2pgf/LICENSE.txt | 201 -- inst/misc/eps2pgf/NOTICE.txt | 63 - inst/misc/eps2pgf/README.txt | 110 - inst/misc/eps2pgf/doc/eps2pgf_manual.pdf | Bin 112401 -> 0 bytes inst/misc/eps2pgf/eps2pgf.jar | Bin 165159 -> 0 bytes inst/misc/eps2pgf/lib/FontBox-0.1.0.jar | Bin 63167 -> 0 bytes inst/misc/eps2pgf/lib/JSAP-2.1.jar | Bin 69344 -> 0 bytes inst/misc/eps2pgf/lib/LICENSE_FontBox.txt | 25 - inst/misc/eps2pgf/lib/LICENSE_JSAP.txt | 31 - inst/misc/eps2pgf/resources/afm/Courier-Bold.afm | 342 --- .../eps2pgf/resources/afm/Courier-BoldOblique.afm | 342 --- .../misc/eps2pgf/resources/afm/Courier-Oblique.afm | 342 --- inst/misc/eps2pgf/resources/afm/Courier.afm | 342 --- inst/misc/eps2pgf/resources/afm/Helvetica-Bold.afm | 2827 ------------------ .../resources/afm/Helvetica-BoldOblique.afm | 2827 ------------------ .../eps2pgf/resources/afm/Helvetica-Oblique.afm | 3051 -------------------- inst/misc/eps2pgf/resources/afm/Helvetica.afm | 3051 -------------------- inst/misc/eps2pgf/resources/afm/MustRead.html | 1 - inst/misc/eps2pgf/resources/afm/Symbol.afm | 213 -- inst/misc/eps2pgf/resources/afm/Times-Bold.afm | 2588 ----------------- .../eps2pgf/resources/afm/Times-BoldItalic.afm | 2384 --------------- inst/misc/eps2pgf/resources/afm/Times-Italic.afm | 2667 ----------------- inst/misc/eps2pgf/resources/afm/Times-Roman.afm | 2419 ---------------- inst/misc/eps2pgf/resources/afm/ZapfDingbats.afm | 225 -- inst/misc/eps2pgf/resources/fontSubstitution.xml | 10 - .../resources/fontdescriptions/Courier-Bold.font | 9 - .../fontdescriptions/Courier-BoldOblique.font | 9 - .../fontdescriptions/Courier-Oblique.font | 9 - .../resources/fontdescriptions/Courier.font | 9 - .../resources/fontdescriptions/Helvetica-Bold.font | 9 - .../fontdescriptions/Helvetica-BoldOblique.font | 9 - .../fontdescriptions/Helvetica-Oblique.font | 9 - .../resources/fontdescriptions/Helvetica.font | 9 - .../eps2pgf/resources/fontdescriptions/Symbol.font | 9 - .../resources/fontdescriptions/Times-Bold.font | 9 - .../fontdescriptions/Times-BoldItalic.font | 9 - .../resources/fontdescriptions/Times-Italic.font | 9 - .../resources/fontdescriptions/Times-Roman.font | 9 - .../resources/fontdescriptions/ZapfDingbats.font | 9 - inst/misc/eps2pgf/resources/texstrings/default.xml | 405 --- .../eps2pgf/resources/texstrings/mathematica.xml | 504 ---- 89 files changed, 25103 insertions(+), 25101 deletions(-) commit 01f30006a39af08f2d4f2334532aaa413c81ef97 Author: Cameron Bracken Date: Wed Jan 21 21:11:00 2009 +0000 Better handling of command line arguments in pgfSweave shell script exec/pgfSweave | 10 +++++----- 1 files changed, 5 insertions(+), 5 deletions(-) commit 44c647b01ee0f5568f9fc0e08577e14b80c099a9 Author: Cameron Bracken Date: Tue Jan 20 08:36:40 2009 +0000 -pgfSweave shell script has more robust option handling -added example in external setion of vignette exec/pgfSweave | 46 +++++--- inst/doc/figs/fig-normalSweave.pdf | Bin 2955 -> 2914 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9571 -> 9201 bytes inst/doc/figs/fig-third.pdf | Bin 68284 -> 67476 bytes inst/doc/pgfSweave-vignette.Rnw | 123 ++++++++++++++++---- inst/doc/pgfSweave-vignette.pdf | Bin 155486 -> 177227 bytes .../vignette-src/pgfSweave-vignette-source.Rnw | 51 +++++++-- 7 files changed, 168 insertions(+), 52 deletions(-) commit a534f4c036f8ee9e3c9905521e42d36225904fb4 Author: Cameron Bracken Date: Tue Jan 20 02:58:45 2009 +0000 Updated README with possible post to R-devel README | 13 +++++++++++++ 1 files changed, 13 insertions(+), 0 deletions(-) commit df8534ec3db8e3f2744db51d202e8b94ee1beaa6 Author: Charlie Sharpsteen Date: Sun Jan 18 19:02:10 2009 +0000 Test of SVN access. Changed email in DESCRIPTION file. DESCRIPTION | 2 +- 1 files changed, 1 insertions(+), 1 deletions(-) commit 45d551c7df95a214e6ac93b46c8806485d28685a Author: Cameron Bracken Date: Sun Jan 18 05:10:43 2009 +0000 - More work on vignette - Added shell script wrapper to pgfSweave function in exec/ NAMESPACE | 1 + README | 2 + exec/pgfSweave | 43 +++++++++ inst/doc/figs/fig-normalSweave.pdf | Bin 2981 -> 2955 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 9586 -> 9571 bytes inst/doc/figs/fig-third.pdf | Bin 67480 -> 68284 bytes inst/doc/pgfSweave-vignette.Rnw | 24 ++--- inst/doc/pgfSweave-vignette.pdf | Bin 154548 -> 155486 bytes inst/example/Makefile | 2 +- inst/misc/pgfsweave | 6 - inst/misc/vignette-src/Makefile | 9 +- .../vignette-src/pgfSweave-vignette-source.Rnw | 98 ++++++++++++++------ 12 files changed, 128 insertions(+), 57 deletions(-) commit 1610dab246ad134605c316bbcd249a270da51f45 Author: Cameron Bracken Date: Wed Jan 14 05:51:13 2009 +0000 - Workaround for vignette dependence on pgfSweave already being installed - run make and make cleanforbuild in inst/misc/vignette-src/ before submitting inst/doc/Sweave.sty | 27 ++++ inst/doc/figs/fig-normalSweave.pdf | Bin 0 -> 2981 bytes inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 0 -> 9586 bytes inst/doc/figs/fig-third.pdf | Bin 0 -> 67480 bytes inst/doc/pgfSweave-example-Rnw.in | 30 ++++ inst/doc/pgfSweave-example-tex.in | 30 ++++ inst/doc/pgfSweave-vignette.Rnw | 160 ++++++++++++++++++++ inst/doc/pgfSweave-vignette.pdf | Bin 152972 -> 154548 bytes inst/example/Makefile | 6 +- inst/misc/pgfsweave | 6 + inst/misc/pgfsweave.sh | 6 - inst/misc/vignette-src/Makefile | 43 +++++- .../vignette-src/pgfSweave-vignette-source.Rnw | 156 +++++++++++++++++++ inst/misc/vignette-src/pgfSweave-vignette.Rnw | 157 ------------------- 14 files changed, 451 insertions(+), 170 deletions(-) commit 394db9a311a99495bc41dbef6e1c5742d79985c2 Author: Cameron Bracken Date: Mon Jan 12 08:52:51 2009 +0000 - Fixed documentation wrapping issue - Updated README README | 1 + man/pgfSweaveDriver.Rd | 10 +++++----- 2 files changed, 6 insertions(+), 5 deletions(-) commit 788b272fbeac0993bbf9c7e7568a448c14317a54 Author: Cameron Bracken Date: Mon Jan 12 08:16:10 2009 +0000 - Fixed documentation errors in R CMD check - updated README - vignette moved again to inst/misc/vignette-src R/pgfSweave.R | 8 +- R/pgfSweaveDriver.R | 10 +- README | 9 +- inst/misc/pgfsweave | 6 - inst/misc/pgfsweave.sh | 6 + inst/misc/src/Makefile | 6 - inst/misc/src/Sweave.sty | 27 ----- inst/misc/src/pgfSweave-vignette.Rnw | 157 ------------------------- inst/misc/vignette-src/Makefile | 6 + inst/misc/vignette-src/Sweave.sty | 27 +++++ inst/misc/vignette-src/pgfSweave-vignette.Rnw | 157 +++++++++++++++++++++++++ man/pgfSweave.Rd | 68 +++++++---- man/pgfSweaveDriver.Rd | 60 ++++++++-- 13 files changed, 304 insertions(+), 243 deletions(-) commit 4313f64de41299587d4ffd4bc29e2bc45613a8d8 Author: Cameron Bracken Date: Mon Jan 12 02:45:38 2009 +0000 - R CMD check now has no errors but still gives warnings - Created README file with the contents of the sourceforge tracker - moved inst/doc/src to inst/misc/src until ussue with vignette is resolved NEWS | 4 + README | 28 ++++++ inst/NOTES | 16 ---- inst/doc/src/Makefile | 6 -- inst/doc/src/Sweave.sty | 27 ------ inst/doc/src/pgfSweave-vignette.Rnw | 157 ---------------------------------- inst/misc/src/Makefile | 6 ++ inst/misc/src/Sweave.sty | 27 ++++++ inst/misc/src/pgfSweave-vignette.Rnw | 157 ++++++++++++++++++++++++++++++++++ man/pgfSweave.Rd | 2 +- man/pgfSweaveDriver.Rd | 2 +- 11 files changed, 224 insertions(+), 208 deletions(-) commit eeed33ead213997add64fa205f7140dff73a2711 Author: Cameron Bracken Date: Mon Jan 12 00:35:13 2009 +0000 Updated DESCRIPTION file for trunk version 0.6 DESCRIPTION | 8 ++++---- 1 files changed, 4 insertions(+), 4 deletions(-) commit faa4bfe6fb804957c598e79a0b1bb826731c9d2a Author: Cameron Bracken Date: Mon Jan 12 00:31:33 2009 +0000 Initial commit, added trunk and version 0.5 tag DESCRIPTION | 12 + NAMESPACE | 6 + R/cacheSweaveUnexportedFunctions.R | 190 ++ R/pgfSweave.R | 24 + R/pgfSweaveDriver.R | 506 ++++ R/zzz.R | 16 + inst/COPYING | 17 + inst/NOTES | 16 + inst/doc/pgfSweave-vignette.pdf | Bin 0 -> 152972 bytes inst/doc/src/Makefile | 6 + inst/doc/src/Sweave.sty | 27 + inst/doc/src/pgfSweave-vignette.Rnw | 157 + inst/example/Makefile | 4 + inst/example/pgfSweave-example.Rnw | 30 + inst/example/pgfSweave-example.tex | 30 + inst/misc/eps2pgf/LICENSE.txt | 201 ++ inst/misc/eps2pgf/NOTICE.txt | 63 + inst/misc/eps2pgf/README.txt | 110 + inst/misc/eps2pgf/doc/eps2pgf_manual.pdf | Bin 0 -> 112401 bytes inst/misc/eps2pgf/eps2pgf.jar | Bin 0 -> 165159 bytes inst/misc/eps2pgf/lib/FontBox-0.1.0.jar | Bin 0 -> 63167 bytes inst/misc/eps2pgf/lib/JSAP-2.1.jar | Bin 0 -> 69344 bytes inst/misc/eps2pgf/lib/LICENSE_FontBox.txt | 25 + inst/misc/eps2pgf/lib/LICENSE_JSAP.txt | 31 + inst/misc/eps2pgf/resources/afm/Courier-Bold.afm | 342 +++ .../eps2pgf/resources/afm/Courier-BoldOblique.afm | 342 +++ .../misc/eps2pgf/resources/afm/Courier-Oblique.afm | 342 +++ inst/misc/eps2pgf/resources/afm/Courier.afm | 342 +++ inst/misc/eps2pgf/resources/afm/Helvetica-Bold.afm | 2827 ++++++++++++++++++ .../resources/afm/Helvetica-BoldOblique.afm | 2827 ++++++++++++++++++ .../eps2pgf/resources/afm/Helvetica-Oblique.afm | 3051 ++++++++++++++++++++ inst/misc/eps2pgf/resources/afm/Helvetica.afm | 3051 ++++++++++++++++++++ inst/misc/eps2pgf/resources/afm/MustRead.html | 1 + inst/misc/eps2pgf/resources/afm/Symbol.afm | 213 ++ inst/misc/eps2pgf/resources/afm/Times-Bold.afm | 2588 +++++++++++++++++ .../eps2pgf/resources/afm/Times-BoldItalic.afm | 2384 +++++++++++++++ inst/misc/eps2pgf/resources/afm/Times-Italic.afm | 2667 +++++++++++++++++ inst/misc/eps2pgf/resources/afm/Times-Roman.afm | 2419 ++++++++++++++++ inst/misc/eps2pgf/resources/afm/ZapfDingbats.afm | 225 ++ inst/misc/eps2pgf/resources/fontSubstitution.xml | 10 + .../resources/fontdescriptions/Courier-Bold.font | 9 + .../fontdescriptions/Courier-BoldOblique.font | 9 + .../fontdescriptions/Courier-Oblique.font | 9 + .../resources/fontdescriptions/Courier.font | 9 + .../resources/fontdescriptions/Helvetica-Bold.font | 9 + .../fontdescriptions/Helvetica-BoldOblique.font | 9 + .../fontdescriptions/Helvetica-Oblique.font | 9 + .../resources/fontdescriptions/Helvetica.font | 9 + .../eps2pgf/resources/fontdescriptions/Symbol.font | 9 + .../resources/fontdescriptions/Times-Bold.font | 9 + .../fontdescriptions/Times-BoldItalic.font | 9 + .../resources/fontdescriptions/Times-Italic.font | 9 + .../resources/fontdescriptions/Times-Roman.font | 9 + .../resources/fontdescriptions/ZapfDingbats.font | 9 + inst/misc/eps2pgf/resources/texstrings/default.xml | 405 +++ .../eps2pgf/resources/texstrings/mathematica.xml | 504 ++++ inst/misc/pgfsweave | 6 + man/pgfSweave.Rd | 68 + man/pgfSweaveDriver.Rd | 32 + 59 files changed, 26243 insertions(+), 0 deletions(-) commit 4b897c935d3e95fb55a7f048c151a5a539199bc5 Author: R-forge Date: Sun Jan 11 20:26:15 2009 +0000 Create initial repository structure