phangorn: Phylogenetic Analysis in R

Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.

Version: 2.1.1
Depends: R (≥ 3.2.0), ape (≥ 4.0)
Imports: quadprog, igraph (≥ 1.0), Matrix, parallel, methods, utils, stats, graphics, grDevices, fastmatch, magrittr, Rcpp (≥ 0.12.0)
LinkingTo: Rcpp
Suggests: testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr, rmarkdown, Biostrings
Published: 2016-12-04
Author: Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Leonardo de Oliveira Martins [aut], Alastair Potts [aut], Tim W. White [aut], Cyrill Stachniss [ctb], Michelle Kendall [ctb]
Maintainer: Klaus Schliep <klaus.schliep at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: phangorn citation info
Materials: README NEWS
In views: Genetics, Phylogenetics
CRAN checks: phangorn results


Reference manual: phangorn.pdf
Vignettes: Ancestral Sequence Reconstruction
Constructing phylogenetic trees
Advanced features
Splits and Networx
Package source: phangorn_2.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: phangorn_2.1.1.tgz, r-oldrel: phangorn_2.1.1.tgz
Old sources: phangorn archive

Reverse dependencies:

Reverse depends: apex, MonoPhy, phybreak
Reverse imports: coalescentMCMC, CommT, corHMM, indelmiss, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, recluster, rwty, SeqFeatR, strataG, timetree, TKF, treescape


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