phangorn: Phylogenetic Analysis in R

Phylogenetic analysis in R: Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.

Version: 2.0.3
Depends: R (≥ 3.0.0), ape (≥ 3.4)
Imports: quadprog, igraph (≥ 1.0), Matrix, parallel, nnls, methods, utils, stats, graphics, grDevices, fastmatch
Suggests: testthat, seqLogo, seqinr, xtable, flashClust, rgl, knitr, rmarkdown, Biostrings
Published: 2016-05-01
Author: Klaus Schliep [aut, cre], Emmanuel Paradis [aut], Alastair Potts [aut]
Maintainer: Klaus Schliep <klaus.schliep at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/KlausVigo/phangorn
NeedsCompilation: yes
Citation: phangorn citation info
Materials: README NEWS
In views: Genetics, Phylogenetics
CRAN checks: phangorn results

Downloads:

Reference manual: phangorn.pdf
Vignettes: Ancestral Sequence Reconstruction
Constructing phylogenetic trees
Advanced features
IntertwiningTreesAndNetworks
Splits and Networx
Package source: phangorn_2.0.3.tar.gz
Windows binaries: r-devel: phangorn_2.0.2.zip, r-release: phangorn_2.0.2.zip, r-oldrel: phangorn_2.0.2.zip
OS X Snow Leopard binaries: r-release: phangorn_2.0.3.tgz, r-oldrel: phangorn_1.99-7.tgz
OS X Mavericks binaries: r-release: phangorn_2.0.3.tgz
Old sources: phangorn archive

Reverse dependencies:

Reverse depends: apex, MonoPhy
Reverse imports: coalescentMCMC, CommT, corHMM, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, recluster, SeqFeatR, timetree, TKF, treescape