phantom: Gene Set Pareto Heterogeneity Analysis of Time-Course Gene Expression Data

Pareto front based statistical tool for detecting heterogeneity in gene sets and biological modules from time-course data. Details about this method are described in Gu, J., et al. (2017) <doi:10.1093/bioinformatics/btx348>: Phantom: investigating heterogeneous gene sets in time-course data.

Version: 0.1.3
Depends: R (≥ 3.3)
Imports: Rcpp (≥ 0.12.3), NMF (≥ 0.20.6), MASS (≥ 7.3-35), RColorBrewer (≥ 1.1-2), gplots (≥ 2.16.0), qusage (≥ 2.12.0)
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown
Published: 2018-03-29
Author: Jinghua Gu [aut, cre], Xuan Wang [aut], Jinayn Chan [aut, cre], Nicole Baldwin [aut], Jacob Turner [aut]
Maintainer: Jinyan Chan <Jinyan.Chan at bswhealth.org>
License: GPL-2
NeedsCompilation: yes
CRAN checks: phantom results

Downloads:

Reference manual: phantom.pdf
Vignettes: An Introduction to Phantom
Package source: phantom_0.1.3.tar.gz
Windows binaries: r-prerel: phantom_0.1.3.zip, r-release: phantom_0.1.3.zip, r-oldrel: not available
OS X binaries: r-prerel: phantom_0.1.3.tgz, r-release: phantom_0.1.3.tgz
Old sources: phantom archive

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