phybreak: Analysis of Outbreaks with Sequence Data

Implementation the outbreak analysis method described by Klinkenberg et al (2016) <doi:10.1101/069195>. Simulate outbreaks, analyse datasets by creating samples from the posterior distribution with a Markov-Chain Monte Carlo sampler, and summarize the output.

Version: 0.1.1
Depends: R (≥ 3.1.0), phangorn, ape
Imports: Rcpp (≥ 0.12.1), methods, stats, utils
LinkingTo: Rcpp
Suggests: coda, phytools, OutbreakTools
Published: 2016-09-01
Author: Don Klinkenberg [aut, cre]
Maintainer: Don Klinkenberg <don at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: phybreak citation info
Materials: README NEWS
CRAN checks: phybreak results


Reference manual: phybreak.pdf
Package source: phybreak_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: phybreak_0.1.1.tgz
OS X Mavericks binaries: r-oldrel: phybreak_0.1.1.tgz
Old sources: phybreak archive


Please use the canonical form to link to this page.