plmDE: Additive partially linear models for differential gene expression analysis

A set of tools for identifying genes whose differential expression is associated with measurements of other covariates on a continuous scale. These methods rely on generalized additive partially linear models which can be fitted efficiently using a B-spline basis approximation. Still under development: methods for interfacing with objects extending the eSet class and a function to pass linear models in edgeR and DEseq format.

Version: 1.0
Depends: R (≥ 2.14.2), MASS, splines, limma, R.oo
Suggests: Biobase, edgeR, DESeq
Published: 2012-05-09
Author: Jonas Mueller
Maintainer: Jonas <jonasmueller303 at hotmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: plmDE results

Downloads:

Reference manual: plmDE.pdf
Package source: plmDE_1.0.tar.gz
OS X binary: plmDE_1.0.tgz
Windows binary: plmDE_1.0.zip