ppiPre: Predict protein-protein interactions based on functional and
topological similarities
This package implements several functions useful for
computing similarities between proteins based on their GO
annotation, KEGG annotation and PPI network topology. It
integrates these similarities to predict PPIs using an SVM
classifier. Twenty species are supported, including Anopheles,
Arabidopsis, Bovine, Canine, Chicken, Chimp, E coli strain K12
and strain Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat,
Worm, Xenopus, Yeast, Streptomyces coelicolor and Zebrafish.
| Version: |
1.3 |
| Depends: |
R (≥ 2.12), AnnotationDbi, GO.db, KEGG.db, org.Sc.sgd.db, igraph, e1071, org.Hs.eg.db |
| Suggests: |
org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db |
| Published: |
2012-03-21 |
| Author: |
Yue Deng |
| Maintainer: |
Yue Deng <anfdeng at 163.com> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| CRAN checks: |
ppiPre results |
Downloads: