protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

This R package helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.

Version: 0.2.9
Depends: R (≥ 3.0.2), methods
Imports: Rcpp (≥ 0.9.9)
Suggests: lattice, RUnit, BiocGenerics
Published: 2014-09-30
Author: Christian Panse, Jonas Grossmann, Simon Barkow-Oesterreicher
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
License: GPL-3
URL: http://fgcz-data.uzh.ch/~cpanse/protViz/
NeedsCompilation: yes
Materials: NEWS
CRAN checks: protViz results

Downloads:

Reference manual: protViz.pdf
Vignettes: PTM MarkerFinder
protViz primer
Package source: protViz_0.2.9.tar.gz
Windows binaries: r-devel: protViz_0.2.9.zip, r-release: protViz_0.2.9.zip, r-oldrel: protViz_0.2.9.zip
OS X Snow Leopard binaries: r-release: protViz_0.2.9.tgz, r-oldrel: protViz_0.2.9.tgz
OS X Mavericks binaries: r-release: protViz_0.2.9.tgz
Old sources: protViz archive