protiq: Protein (identification and) quantification based on peptide
Method for protein quantification based on identified and
quantified peptides. protiq can be used for absolute and relative protein
quantification. Input peptide abundance scores can come from various
sources, including SRM transition areas and intensities or spectral counts
derived from shotgun experiments. The package is still being extended to
also include the model for protein identification, MIPGEM, presented in
Gerster, S., Qeli, E., Ahrens, C.H. and Buehlmann, P. (2010). Protein and
gene model inference based on statistical modeling in k-partite graphs.
Proceedings of the National Academy of Sciences 107(27):12101-12106.
||graph, RBGL, mvtnorm
||Sarah Gerster and Peter Buehlmann
||Sarah Gerster <sarah.gerster at isb-sib.ch>
||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]