protiq: Protein (identification and) quantification based on peptide
Method for protein quantification based on identified and
quantified peptides. protiq can be used for absolute and
relative protein quantification. Input peptide abundance scores
can come from various sources, including SRM transition areas
and intensities or spectral counts derived from shotgun
experiments. The package is still being extended to also
include the model for protein identification, MIPGEM, presented
in Gerster, S., Qeli, E., Ahrens, C.H. and Buehlmann, P.
(2010). Protein and gene model inference based on statistical
modeling in k-partite graphs. Proceedings of the National
Academy of Sciences 107(27):12101-12106.
||graph, RBGL, mvtnorm|
||Sarah Gerster and Peter Buehlmann|
||Sarah Gerster <sarah.gerster at isb-sib.ch>|
||GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]|