quipu: Summary charts of micro satellite profiles for a set of biological samples

Gene banks increasingly use molecular markers for routine characterization of plant collections and farmer managed diversity. The gene bank of the International Potato Center presently uses a micro-satellite marker kit to produce molecular profiles for potato accessions. We have been searching for a compact graphical representation that shows both molecular diversity and accession characteristics - thus permitting biologists and collection curators to have a simple way to interpret molecular data. Inspired by the ancient Andean data recording system we devised a graph that allows for standardized representation while leaving room for updates of the marker kit and the collection of accessions. The graph has been used in several catalogs of potatoes.

Version: 1.9.0
Depends: R (≥ 3.0.0), stats, agricolae, stringr, pixmap, shiny, xtable
Suggests: knitr
Published: 2014-04-22
Author: Reinhard Simon, Pablo Carhuapoma, Vilma Hualla, Stef de Haan, Marc Ghislain, Jorge Nunez, Rene Gomez, Felipe de Mendiburu, William Roca, Merideth Bonierbale
Maintainer: Reinhard Simon <R.SIMON at CGIAR.ORG>
License: GPL-2
Copyright: International Potato Center
NeedsCompilation: no
Materials: README
CRAN checks: quipu results

Downloads:

Reference manual: quipu.pdf
Vignettes: Quipu tutorial
Package source: quipu_1.9.0.tar.gz
Windows binaries: r-devel: quipu_1.9.0.zip, r-release: quipu_1.9.0.zip, r-oldrel: quipu_1.9.0.zip
OS X Snow Leopard binaries: r-release: quipu_1.9.0.tgz, r-oldrel: quipu_1.9.0.tgz
OS X Mavericks binaries: r-release: quipu_1.9.0.tgz