r4ss: R Code for Stock Synthesis

A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.19.01, from April 2022).

Version: 1.44.0
Depends: R (≥ 3.5.0)
Imports: coda, corpcor, dplyr, forcats, ggplot2, lifecycle, stringr, kableExtra
Suggests: gtools, gplots, knitr, maps, pso, testthat, truncnorm, rmarkdown, shiny, flextable, reshape2, ggpubr
Published: 2022-05-26
Author: Ian G. Taylor [aut, cre], Ian J. Stewart [aut], Allan C. Hicks [aut], Tommy M. Garrison [aut], Andre E. Punt [aut], John R. Wallace [aut], Chantel R. Wetzel [aut], James T. Thorson [aut], Yukio Takeuchi [aut], Kotaro Ono [aut], Cole C. Monnahan [aut], Christine C. Stawitz [aut], Z. Teresa A'mar [aut], Athol R. Whitten [aut], Kelli F. Johnson [aut], Robbie L. Emmet [aut], Sean C. Anderson [aut], Gwladys I. Lambert [aut], Megan M. Stachura [aut], Andrew B. Cooper [aut], Andi Stephens [aut], Neil L. Klaer [aut], Carey R. McGilliard [aut], Iago Mosqueira [aut], Watal M. Iwasaki [aut], Kathryn L. Doering [aut], Andrea M. Havron [aut], Nathan Vaughan [aut], LaTreese S. Denson [aut], Ashleigh J. Novak [aut], Henning Winker [aut], Lee Qi [aut], Megumi Oshima [aut], Eric Fletcher [aut]
Maintainer: Ian G. Taylor <Ian.Taylor at noaa.gov>
BugReports: https://github.com/r4ss/r4ss/issues
License: GPL-3
URL: https://github.com/r4ss/r4ss
NeedsCompilation: no
Citation: r4ss citation info
Materials: README NEWS
CRAN checks: r4ss results

Documentation:

Reference manual: r4ss.pdf

Downloads:

Package source: r4ss_1.44.0.tar.gz
Windows binaries: r-devel: r4ss_1.44.0.zip, r-release: r4ss_1.36.1.zip, r-oldrel: r4ss_1.36.1.zip
macOS binaries: r-release (arm64): r4ss_1.44.0.tgz, r-oldrel (arm64): r4ss_1.36.1.tgz, r-release (x86_64): r4ss_1.36.1.tgz, r-oldrel (x86_64): r4ss_1.36.1.tgz
Old sources: r4ss archive

Reverse dependencies:

Reverse imports: ss3sim
Reverse suggests: MSEtool

Linking:

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