rase: Range Ancestral State Estimation for Phylogeography and Comparative Analyses

Implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015) <doi:10.1093/sysbio/syv057>. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.

Version: 0.3-2
Depends: R (≥ 2.14.0), ape (≥ 3.1-0), polyCub (≥ 0.5-0), spatstat (≥ 1.36-0)
Imports: mvtnorm (≥ 1.0-0), rgl, sm, methods, grDevices, stats
Suggests: sp, coda, rpanel
Published: 2017-03-22
Author: Ignacio Quintero [aut, cre], Forrest W. Crawford [aut], Petr Keil [aut]
Maintainer: Ignacio Quintero <ignacio.quintero at yale.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: rase citation info
Materials: README
CRAN checks: rase results

Downloads:

Reference manual: rase.pdf
Package source: rase_0.3-2.tar.gz
Windows binaries: r-devel: rase_0.3-2.zip, r-release: rase_0.3-2.zip, r-oldrel: rase_0.3-2.zip
OS X Mavericks binaries: r-release: rase_0.3-2.tgz, r-oldrel: rase_0.3-2.tgz
Old sources: rase archive

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