rehh: Searching for footprints of selection using Haplotype Homozygosity based tests

Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.

Version: 1.11
Depends: R (≥ 2.10), gplots, methods
Published: 2013-08-26
Author: Mathieu Gautier and Renaud Vitalis
Maintainer: Mathieu Gautier <mathieu.gautier at supagro.inra.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Materials: ChangeLog
CRAN checks: rehh results

Downloads:

Reference manual: rehh.pdf
Package source: rehh_1.11.tar.gz
OS X binary: rehh_1.11.tgz
Windows binary: rehh_1.11.zip
Old sources: rehh archive