rhierbaps: Clustering Genetic Sequence Data Using the HierBAPS Algorithm

Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.

Version: 1.0.0
Imports: ape, dplyr, purrr, utils, ggplot2, LambertW
Suggests: knitr, rmarkdown, ggtree, phytools, testthat
Published: 2018-07-20
Author: Gerry Tonkin-Hill [cre, aut]
Maintainer: Gerry Tonkin-Hill <g.tonkinhill at gmail.com>
BugReports: https://github.com/gtonkinhill/rhierbaps/issues
License: MIT + file LICENSE
URL: https://github.com/gtonkinhill/rhierbaps
NeedsCompilation: no
Citation: rhierbaps citation info
Materials: README NEWS
CRAN checks: rhierbaps results

Downloads:

Reference manual: rhierbaps.pdf
Vignettes: Introduction to rhierbaps
Package source: rhierbaps_1.0.0.tar.gz
Windows binaries: r-devel: rhierbaps_1.0.0.zip, r-release: rhierbaps_1.0.0.zip, r-oldrel: rhierbaps_1.0.0.zip
OS X binaries: r-release: rhierbaps_1.0.0.tgz, r-oldrel: rhierbaps_1.0.0.tgz

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