roots: Reconstructing Ordered Ontogenic Trajectories

A set of tools to reconstruct ordered ontogenic trajectories from single cell RNAseq data.

Version: 1.0
Depends: R (≥ 3.0)
Imports: animation (≥ 2.4), rARPACK (≥ 0.11-0), igraph (≥ 1.0.0)
Suggests: knitr, rmarkdown
Published: 2017-07-11
Author: Wajid Jawaid [aut, cre]
Maintainer: Wajid Jawaid <wj241 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: roots results

Downloads:

Reference manual: roots.pdf
Vignettes: Infer biologically plausible journeys through single cell data
Package source: roots_1.0.tar.gz
Windows binaries: r-devel: roots_1.0.zip, r-release: roots_1.0.zip, r-oldrel: roots_1.0.zip
OS X El Capitan binaries: r-release: roots_1.0.tgz
OS X Mavericks binaries: r-oldrel: roots_1.0.tgz

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