rrBLUP: Ridge Regression and Other Kernels for Genomic Selection

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Version: 4.6
Depends: R (≥ 2.14)
Imports: stats, graphics, grDevices
Suggests: parallel
Published: 2018-01-28
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman <endelman at wisc.edu>
License: GPL-3
URL: http://potatobreeding.cals.wisc.edu/software
NeedsCompilation: no
Citation: rrBLUP citation info
Materials: NEWS
CRAN checks: rrBLUP results

Downloads:

Reference manual: rrBLUP.pdf
Package source: rrBLUP_4.6.tar.gz
Windows binaries: r-devel: rrBLUP_4.6.zip, r-release: rrBLUP_4.6.zip, r-oldrel: rrBLUP_4.6.zip
OS X binaries: r-release: rrBLUP_4.6.tgz, r-oldrel: rrBLUP_4.6.tgz
Old sources: rrBLUP archive

Reverse dependencies:

Reverse imports: BreedingSchemeLanguage, GROAN, PopVar
Reverse suggests: polyRAD

Linking:

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