rvHPDT: Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

Version: 3.0
Depends: gtools, R (≥ 2.15.0)
Published: 2014-05-14
Author: Wei Guo
Maintainer: Wei Guo <wei.guo3 at nih.gov>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: rvHPDT results

Downloads:

Reference manual: rvHPDT.pdf
Package source: rvHPDT_3.0.tar.gz
Windows binaries: r-devel: rvHPDT_3.0.zip, r-release: rvHPDT_3.0.zip, r-oldrel: rvHPDT_3.0.zip
OS X Snow Leopard binaries: r-oldrel: rvHPDT_3.0.tgz
OS X Mavericks binaries: r-release: rvHPDT_3.0.tgz
Old sources: rvHPDT archive