saasCNV: Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.

Version: 0.3.4
Depends: R (≥ 2.10), RANN, DNAcopy
Published: 2016-05-18
Author: Zhongyang Zhang [aut, cre], Ke Hao [aut], Nancy R. Zhang [ctb]
Maintainer: Zhongyang Zhang <zhongyang.zhang at mssm.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://zhangz05.u.hpc.mssm.edu/saasCNV/
NeedsCompilation: no
Materials: ChangeLog
CRAN checks: saasCNV results

Downloads:

Reference manual: saasCNV.pdf
Package source: saasCNV_0.3.4.tar.gz
Windows binaries: r-devel: saasCNV_0.3.4.zip, r-release: saasCNV_0.3.4.zip, r-oldrel: saasCNV_0.3.4.zip
OS X El Capitan binaries: r-release: saasCNV_0.3.4.tgz
OS X Mavericks binaries: r-oldrel: saasCNV_0.3.4.tgz

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