RELEASE HISTORY OF THE "sda" PACKAGE ======================================== CHANGES IN `sda' PACKAGE VERSION 1.2.1 - NAMESPACE file added - updated requirements for "corpcor" and "entropy" CHANGES IN `sda' PACKAGE VERSION 1.2.0 - requires now corpcor 1.6.0 and R version 2.10.0 - new function catscore() - centroids() function has been streamlined and simplified - updated documentation - employs function crossprod.powcor.shrink() of corpcor which leads to reduced memory imprint and increased speed in functions catscore(), sda.ranking() and sda() CHANGES IN `sda' PACKAGE VERSION 1.1.0 - new sda.ranking() function - plot function for "sda.ranking" objects - additional to FDR values computation of higher-criticism scores - reference to Ahdesm\"aki and Strimmer (2009) paper added - Singh et al. (2002) example data added - improved help pages and examples - the data khan.x is now on log-scale CHANGES IN `sda' PACKAGE VERSION 1.0.3 - sda() now provides ranking of features. - fdr values can optionally be computed for each feature. - centroids() now reports number of samples and features. - sda() function has been rewritten, and a bug introduced in version 1.0.2 has been corrected. CHANGES IN `sda' PACKAGE VERSION 1.0.2 - predict.sda() is now very much faster, and the object returned by sda() needs much less memory. - the centroids() function now additionally computes the pooled mean and arbitrary powers of the correlation matrix (not just alpha=-1). - the microarray data from Khan et al. 2001 are now used as example. - bug fix: for shrinkage DDA the inverse correlation matrix is not computed unnecessarily any more. CHANGES IN `sda' PACKAGE VERSION 1.0.1 - new centroids() function to compute group-wise centroids, (pooled variances), and inverse pooled correlations. - uses the "collapse" option in corpcor >= 1.4.8 to save memory when estimated correlation is diagonal (effectively turning LDA into DDA if the estimated shrinkage intensity lambda=1). CHANGES IN `sda' PACKAGE VERSION 1.0.0 This package implements LDA and DDA classification, where the training of the classifier is done via Stein-type shrinkage of frequencies, variances, and correlation. This approach is particularly suitable for high-dimensional classification. This is the first public release (27 October 2008).