seqinr: Biological Sequences Retrieval and Analysis

Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Includes also utilities for sequence data management under the ACNUC system.

Version: 3.3-3
Depends: R (≥ 2.10.0)
Imports: ade4, segmented
Published: 2016-10-13
Author: Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]
Maintainer: Simon Penel <simon.penel at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: zlib headers and library.
Citation: seqinr citation info
In views: Genetics
CRAN checks: seqinr results


Reference manual: seqinr.pdf
Package source: seqinr_3.3-3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: seqinr_3.3-3.tgz, r-oldrel: seqinr_3.3-3.tgz
Old sources: seqinr archive

Reverse dependencies:

Reverse depends: CNOGpro, DCODE, EnsCat, LncFinder, LSPFP, MEET, mlgt, rPlant
Reverse imports: adegenet, alakazam, aLFQ, AlignStat, AmyloGram, AnnotationBustR, apmsWAPP, caRpools, CONDOP, cooccurNet, evobiR, gkmSVM, gquad, hoardeR, metacoder, prozor, PTXQC, SafeQuant, shazam, signalHsmm, sivipm
Reverse suggests: cubfits, phangorn, rnaseqWrapper, SimRAD, TKF, vhica
Reverse enhances: spgs


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