sequenza: Copy Number Estimation from Tumor Genome Sequencing Data

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Version: 2.1.2
Depends: R (≥ 3.0.0), copynumber, parallel, squash
Published: 2015-10-10
Author: Francesco Favero, Andrea M. Marquard, Tejal Joshi, Aron C. Eklund
Maintainer: Francesco Favero <favero at cbs.dtu.dk>
License: GPL-3
URL: http://cbs.dtu.dk/biotools/sequenza/, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group
NeedsCompilation: no
Citation: sequenza citation info
Materials: NEWS
CRAN checks: sequenza results

Downloads:

Reference manual: sequenza.pdf
Vignettes: Sequenza user guide
Package source: sequenza_2.1.2.tar.gz
Windows binaries: r-devel: sequenza_2.1.2.zip, r-release: sequenza_2.1.2.zip, r-oldrel: sequenza_2.1.2.zip
OS X El Capitan binaries: r-release: not available
OS X Mavericks binaries: r-oldrel: sequenza_2.1.2.tgz
Old sources: sequenza archive

Linking:

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